Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g01960 TCTGGAACTGGAAGTCCTTATTTTGATGATGTGCGGAGTAAACCTGAGGTTATTGACCCTCCACAAAATGAAGATATGATGGATGTTGGTGAAAGCGTGAATGATCCTGCTCAAAGTGGCTTAAAACCTAACTTGACTGTCACCAGCAGTGTGCGGGACCTTTTAGAATGTCCTGTGTGTTTAAATGCTATGTACCCTCCCATTCATCAGTGTTCAAATGGTCACACACTGTGCTCTGTTTGCAAGCCCAGGGTGCACAACCGGTGCCCCACATGTAGGCATGAACTTGGCAATATTAGATGCCTGGCATTGGAGAAGGTGGCTGCATCTCTAGAACTTCCTTGTAAATATGAGACCTTTGGTTGCTTGGGCATTTATCCTTATTACAGCAAGCTTAAACATGAATCCCAGTGTGTTTATAGACCTTATAATTGTCCCTATGCTGGATCAGAATGTGCGGTCATTGGTGATATACCTTATCTGGTGTCGCACCTAAAAGATGATCATAAAGTTGATATGCATACTGGCAGTACTTTCAACCATCGTTATGTCAAATCAAATCCACAAGAGGTTGAAAATGCCACATGGATGCTAACGGTTTTCAGCTGCTTTGGCCAGTATTTCTGCCTGCATTTTGAGGCATTTCAGCTTGGAATGGCTCCCGTCTACATAGCTTTTTTACGGTTTATGGGAGATGATCATGAGGCAAAGAACTACAGCTACAGCCTGGAGGTTGGGGGCAATGGAAGGAAGATGATTTGGCAAGGAGTTCCGAGGAGTATTAGAGACAGTCACCGTAAAGTTCGAGACAGTTTTGACGGTCTAATCATCCAACGGAATATGGCCCTCTTTTTTTCTGGAGGAGATCGGAAGGAATTAAAGCTTAGGGTGACTGGAAGAATCTGGAAAGAGCAG 915 44.04 SGTGSPYFDDVRSKPEVIDPPQNEDMMDVGESVNDPAQSGLKPNLTVTSSVRDLLECPVCLNAMYPPIHQCSNGHTLCSVCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYETFGCLGIYPYYSKLKHESQCVYRPYNCPYAGSECAVIGDIPYLVSHLKDDHKVDMHTGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDHEAKNYSYSLEVGGNGRKMIWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24474177 24480891 + Bpe025728 Bpe04g01960 103769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g01960 305 ProSiteProfiles Zinc finger SIAH-type profile. 110 170 IPR013010 GO:0008270
Bpe04g01960 305 SUPERFAMILY RING/U-box 46 96 - -
Bpe04g01960 305 MobiDBLite consensus disorder prediction 1 28 - -
Bpe04g01960 305 SUPERFAMILY TRAF domain-like 110 302 - -
Bpe04g01960 305 CDD Sina 171 299 - -
Bpe04g01960 305 Pfam Seven in absentia protein family 99 298 IPR018121 GO:0005737|GO:0006511|GO:0007275
Bpe04g01960 305 CDD RING-HC_SIAHs 55 93 - -
Bpe04g01960 305 PANTHER E3 UBIQUITIN-PROTEIN LIGASE DIS1 7 305 - -
Bpe04g01960 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 165 IPR013083 -
Bpe04g01960 305 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 166 298 IPR008974 GO:0005515
Bpe04g01960 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 109 IPR013083 -
Bpe04g01960 305 ProSiteProfiles Zinc finger RING-type profile. 57 93 IPR001841 -
Bpe04g01960 305 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 7 305 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe04g01960 Bpe15g00979 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01960 Bpe-Chr4:24474177 Bpe07g01014 Bpe-Chr7:15768477 3.55E-169 dispersed
Bpe15g00979 Bpe-Chr15:19385499 Bpe04g01960 Bpe-Chr4:24474177 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g01960 K04506 - rcu:8270897 611.683