Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00002 ATGCTTCAAATTCGGCTTAGTAGCATTCCTGCTGTAGAAGGTGGGAGTGGGGTAAAGCCTTTGCCTGCTGACTCTGTTACAGTTGCATGCCCTGACCACCTTGTCCTAGCTGATTTGCCTGTGGCAAAGGCCATTGGTTCAGCAACCGCTGCCTCCCTTGTCAAGTCTGTCGGTCGCCGGTCACGCCGTCAACTTGGCGAACGCGTCCATTTTTGTGTTCGATGTGATTACCCTATTGCTATCTATGGCCGCCTGAGCCCTTGTGAGCATGCCTTCTGTCTGGATTGTGCAAGGAGTGTTTCAATTTGTCATGTTTGTGATGAACGTATTCAGAAGATCCAAACAGTTAAAATGATGGAAGGCATCTTCATTTGTGCAGCACCTCATTGTCTCAAGTCCTTTATGAAGAGGACTGAATTTGAATTCCATATTCATGAGAATCATGCTGACCTACTTCAGCCAAATCCTGAGAAAGATGATGGAAATGAATCTGAGGCTCAGAGTAACAAACAATCTACAGCTTCTGATTCAACTGTACGAGGTCCACTAAGGCAAGTATATTCTCCGGGCTCCAATACCCAGCATCTAGATCGGGAAGACAAAGCTCAGCGTCAACAATCTAGAGACCAATCTTGGTCAGCTACACTTTCAAAACAGCCTACAAGTTTTGGCCAACCCCAACATAACCTATTAGACTCTCTACCGGAAGACAGCCAACCACAAATCCTTGACAGGCTCGATAGTCAAAACCGTTTCCTCCAACAAAACTTTGAAACCCAAGGTGCTCCATATCAGGAAACCGGTCTGTTACCGGATAAGCAACTAGGAATTCTATCTGAGCCACCATTTTCTGAATATCCACCCATGCATACTATTCAGCCACCAAGCTTTGTGGTACCGATGACCTCAAACTTAATGTTGACTCCCCCTCTACCATTTGGTTATCCTCCTTTTCCAACGGAGGGATCTCAACAGTTTTACAGTGCGCCTTATGAAGTGGCCAGGCAAGATTCAGTTGCACCTCAAGTAGGACAAGAGCAGGGTTCGTTGTTGGGTTTCCCGCCATCAGTAGGTACAAATTTTTTGGGAAGTTATCAGCAGCCCTGGAATGCTGTTAAAGTCATTCCTTTTGAACCTTCTGCTGGGGGTCAAGGAATTTCAGATGGTTTGGATGATTCTCAAGTGAAAGGTGGATTCTATCAGGCTGAATATGGCCGCCATCCAGGAAGTTTGCCATTGAATGCTTCCATTCCACCTTTGGCTAGCAAGTGGCTTGAACCAGTGCAGAGTGGCAGCACGATGGATCTGAGGGATGGGAAGGGTATATTGGCTCCACAGCCTATGCCATTTTCCGCTCGGCCACACCCATCGCAACCTCAGTCCTCACAACACATGCGAGGTAAGTTTTATTTGGGCGAAATGGGTCATGACGGACAGGGTTTTGTATGGCAGCACGAGAACAACGATAATTTTGGTGGTGGTTTGGACTAA 1491 46.81 MLQIRLSSIPAVEGGSGVKPLPADSVTVACPDHLVLADLPVAKAIGSATAASLVKSVGRRSRRQLGERVHFCVRCDYPIAIYGRLSPCEHAFCLDCARSVSICHVCDERIQKIQTVKMMEGIFICAAPHCLKSFMKRTEFEFHIHENHADLLQPNPEKDDGNESEAQSNKQSTASDSTVRGPLRQVYSPGSNTQHLDREDKAQRQQSRDQSWSATLSKQPTSFGQPQHNLLDSLPEDSQPQILDRLDSQNRFLQQNFETQGAPYQETGLLPDKQLGILSEPPFSEYPPMHTIQPPSFVVPMTSNLMLTPPLPFGYPPFPTEGSQQFYSAPYEVARQDSVAPQVGQEQGSLLGFPPSVGTNFLGSYQQPWNAVKVIPFEPSAGGQGISDGLDDSQVKGGFYQAEYGRHPGSLPLNASIPPLASKWLEPVQSGSTMDLRDGKGILAPQPMPFSARPHPSQPQSSQHMRGKFYLGEMGHDGQGFVWQHENNDNFGGGLD 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 72464 75055 - Bpe017384.1 Bpe05g00002 103779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00002 496 ProSitePatterns Zinc finger RING-type signature. 88 97 IPR017907 -
Bpe05g00002 496 MobiDBLite consensus disorder prediction 166 193 - -
Bpe05g00002 496 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 123 IPR013083 -
Bpe05g00002 496 MobiDBLite consensus disorder prediction 150 235 - -
Bpe05g00002 496 MobiDBLite consensus disorder prediction 207 235 - -
Bpe05g00002 496 MobiDBLite consensus disorder prediction 150 165 - -
Bpe05g00002 496 ProSitePatterns Zinc finger C2H2 type domain signature. 125 148 IPR013087 -
Bpe05g00002 496 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 1 463 IPR040383 GO:0016567|GO:0061630
Bpe05g00002 496 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI 1 463 - -
Bpe05g00002 496 CDD RING-HC_HAKAI_like 70 106 IPR040380 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00002 Bpe-Chr1:16490 Bpe05g00002 Bpe-Chr5:72464 5.69E-12 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00002 K15685 - qsu:112018474 637.491