Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00017 ATGCCGATGTTCCATCCCTCTAGCCGGAGGAACGGGCAAGTTCTGGGCATCGACGACGGAGGCCGGCTGCTAGATCTGGAAACTGCCGTGAAAGATGGGGTTTTGGGTGGTTCATGCGTTGGCTCAATCAGCGATAATGGATTATCTAAGAAAATAGATCTCAATGAAATGATAGAGGAGCTAGAAGCCATAGAAGTTCCCTCTGTATTCATCTGTCCAATATCTCTAGAGCCCATGACAGACCCAGTAACCCTCTGCACTGGCCAAACTTATGAAAGATCAAACATTCTAAAATGGCTGTCCTTGGGCCATTTTTCGTGCCCCACGACAATGCAAGAGCTTTGGGATGACTCTATCACGCCCAATAGAACCCTTTACCAGTTGATACTAACCTGGTTTTCTCAGAAGTACTCCGCCATGAAAAAGAAGTCGGATGATGTGCAGGGGAGGGCCATGGAGCTTCTGGAGACGCTGAAGAAGGTGAAGGGTCAAGCCAGAGTTCAAGCTCTGAAAGAACTCAGGCGACTCGTCTCGGCAAAAGCTTCTGCCAAGAAGACCGTGGTCGACAATGGCGGCGTTAACTTGATTTCTTCTCTTCTGGGTTCTTTTACTTCTCACGCAGTTGGGTCAGAATCTGTTGGGATTCTTGTAAATTTGGAGATCGATTCTGAATCCAAGACAAATCTGATTCAACCCTCCAAAATATCTTTGATAGTTGATATACTCAACGAAGGATCCATCGAAACAAAGATCAACTGCACTAAATTCCTTGAAATTTTGATCAAAGGCAGTGATTTTAGAACAGAAACCATTTCAAGATTGAGTCTACTGGTTGGATTGCTGCGATTAGTGAAGGACAAAAGATACCCGTCTGGAATTTTCGCTGGACTTAGTCTTCTCAAAACTATTTGTGGCCATGAAGCAGTAAAAAACTCATTTTTAAGCGTCGGATTGGTGCAAACTCTAGTGGAACTTCTGCCATCTTTGAATACAGAGTGTTCAGAGTTAGCTCTTTATGTTCTTGAATCAGTCTCTTACCTTGCAGAAGGAAAATTTTGCCTAAAAGATTGTCCGAATACGATAACAAATATCGTGCCGTTGATGATGAGAGTCTCAGAGACTTGTACTCGGCTTTCGATGTCGATCTTGCTGGCCATTTGTAAGGTTGGTCCCGAAGAATTTGCTTCACTTGCAGTCGAGGCAGGCTTGGCAGGTAAGCTTCTTCTTGTTATCCAAAGTGGGTGTAATCCTGCTCTAAAGCAGCAATCTTCAGCGCTGCTGAAACTGTGTAGCTTGAATTACACACCCACTCTCTTCATTTCCAAGTGTAATCTCACAAGAACTATACAA 1350 44.15 MPMFHPSSRRNGQVLGIDDGGRLLDLETAVKDGVLGGSCVGSISDNGLSKKIDLNEMIEELEAIEVPSVFICPISLEPMTDPVTLCTGQTYERSNILKWLSLGHFSCPTTMQELWDDSITPNRTLYQLILTWFSQKYSAMKKKSDDVQGRAMELLETLKKVKGQARVQALKELRRLVSAKASAKKTVVDNGGVNLISSLLGSFTSHAVGSESVGILVNLEIDSESKTNLIQPSKISLIVDILNEGSIETKINCTKFLEILIKGSDFRTETISRLSLLVGLLRLVKDKRYPSGIFAGLSLLKTICGHEAVKNSFLSVGLVQTLVELLPSLNTECSELALYVLESVSYLAEGKFCLKDCPNTITNIVPLMMRVSETCTRLSMSILLAICKVGPEEFASLAVEAGLAGKLLLVIQSGCNPALKQQSSALLKLCSLNYTPTLFISKCNLTRTIQ 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 412537 413886 - Bpe025777 Bpe05g00017 103794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00017 450 SMART Ubox_2 69 132 IPR003613 GO:0004842|GO:0016567
Bpe05g00017 450 Gene3D - 139 444 IPR011989 -
Bpe05g00017 450 ProSiteProfiles U-box domain profile. 65 139 IPR003613 GO:0004842|GO:0016567
Bpe05g00017 450 SUPERFAMILY ARM repeat 154 349 IPR016024 -
Bpe05g00017 450 PANTHER WDSAM1 PROTEIN 40 449 IPR045185 GO:0061630
Bpe05g00017 450 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 40 449 - -
Bpe05g00017 450 SUPERFAMILY RING/U-box 60 136 - -
Bpe05g00017 450 CDD RING-Ubox_PUB 70 112 IPR045210 -
Bpe05g00017 450 Pfam U-box domain 66 136 IPR003613 GO:0004842|GO:0016567
Bpe05g00017 450 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 138 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00017 Bpe-Chr5:412537 Bpe13g00136 Bpe-Chr13:8477602 0 dispersed
Bpe15g00290 Bpe-Chr15:14388881 Bpe05g00017 Bpe-Chr5:412537 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00017 - - vvi:100255725 644.039