Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00030 ATGAAGGTCCATCAATTCGTACGTGGGTTTTGGGAGCTCGAACCACCCTCCCTCTCCCTCGCCTGCAAGCGTCTCCGTCCTCTCGCTCCGAAGCTTCAAACCAACAATGACTCCACAATCTCCTCCTTCGATCTCAAGACCTTCATCAGACCGGACTCGGCCCCCAGACCAAACCCTTCTTCTTCCTTCTCCTCAGAAGACAAGAGAGATTTAATTCCTGTGGAGACTCTTCCTGGAGGGACAAGGTGGAACCCGACTCAAGAACAGATTGGGATATTGGAGATGCTTTACAGGGGAGGAATGAGGACTCCTAATGCACAACAGATAGAGCAAATCACAACCCAGCTAGGTAAATATGGCAAAATCGAAGGTAAAAATGTATTTTATTGGTTTCAGAACCACAAAGCCCGAGAAAGACAGAAGCAAAAGAGAAACAGTCTTGGTCTTTGCCATAGCCCAAGAACAGCTGTAGCAAATTGTAGGGTAGAGGGAGTAGAACATCAAAGAGAGGAAGATAGTTCGTTCAAGAGAAAGAACAGGAGCTGGGTATTTGAATGCTTGGAAGAAGAGATCATCAGCGTAAGCCATGAAGAAGAAGATCAAGGAGATGGAACTTTGGAGTTATTTCCATTACACCCAGAAGGTAGATGA 651 46.24 MKVHQFVRGFWELEPPSLSLACKRLRPLAPKLQTNNDSTISSFDLKTFIRPDSAPRPNPSSSFSSEDKRDLIPVETLPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITTQLGKYGKIEGKNVFYWFQNHKARERQKQKRNSLGLCHSPRTAVANCRVEGVEHQREEDSSFKRKNRSWVFECLEEEIISVSHEEEDQGDGTLELFPLHPEGR 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 583855 584674 - Bpe025779 Bpe05g00030 103807

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00030 216 MobiDBLite consensus disorder prediction 48 80 - -
Bpe05g00030 216 Gene3D - 80 147 - -
Bpe05g00030 216 Pfam Homeodomain 81 140 IPR001356 GO:0003677
Bpe05g00030 216 SUPERFAMILY Homeodomain-like 79 146 IPR009057 -
Bpe05g00030 216 MobiDBLite consensus disorder prediction 196 216 - -
Bpe05g00030 216 CDD homeodomain 81 142 IPR001356 GO:0003677
Bpe05g00030 216 ProSiteProfiles 'Homeobox' domain profile. 86 141 IPR001356 GO:0003677
Bpe05g00030 216 PANTHER WUSCHEL-RELATED HOMEOBOX 4 1 216 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Bpe05g00030 216 SMART HOX_1 78 145 IPR001356 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00030 - - - twl:120000509 297.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00030 Bpe-Chr5:583855 Bpe13g00375 Bpe-Chr13:11501936 2.42E-28 dispersed
Bpe01g00137 Bpe-Chr1:809544 Bpe05g00030 Bpe-Chr5:583855 7.29E-34 transposed
Bpe15g01254 Bpe-Chr15:21022524 Bpe05g00030 Bpe-Chr5:583855 3.48E-27 transposed
Bpe02g01798 Bpe-Chr2:20240886 Bpe05g00030 Bpe-Chr5:583855 1.65E-83 wgd
Bpe02g01798 Bpe-Chr2:20240886 Bpe05g00030 Bpe-Chr5:583855 1.65E-83 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g735 . . . . . . . . Cmo05g00169 Cmo12g00505 . . . Car12g00518 Sed11g0934 . Cpe07g00494 Bhi04g00375 Tan02g1791 Cmetu12g0458 . Hepe08g1298 . Lcy13g2095 Cla08g01585 Cam08g2084 Cec08g1665 Cco08g1796 Clacu08g1770 . Cre08g1554 . . Cone17ag0854 Cone20ag0200 . . . Cme03g02065 . . . . . Bpe05g00030 Bma01g00657 Bma05g00042 . . . Cma12g00562 Cma05g00171 Car05g00145 . Cpe11g00141 . . . . . . . . . . . . . . . Lsi08g01489 Csa02g01931 Chy03g01558 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe02g00305 . 1 176 Wox Gene Family AT4G35550 59.5 8.7e-52 200.7
Bpe05g00030 . 1 147 Wox Gene Family AT1G46480 65.2 4.9e-49 191.0
Bpe02g01798 . 1 138 Wox Gene Family AT1G46480 59.2 3.4e-42 168.3
Bpe05g00030 . 1 147 Wox Gene Family AT1G46480 65.2 4.9e-49 191.0
Bpe02g01798 . 1 138 Wox Gene Family AT1G46480 59.2 3.4e-42 168.3
Bpe02g00305 . 1 176 Wox Gene Family AT4G35550 59.5 8.7e-52 200.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005110 2 1 1 2 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21401 PF00046 Homeodomain 6.50E-19 CL0123 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00030 Bpe_Chr05 FPKM 18.780323 20.744846 69.168388 68.676064 1.011256 0.649347 0.958688 0.300017 0.0 0.162237