Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00040 ATGGACCCTTCTATTGTGAAGCTTCTTGAAGATGATGAGGATTGGCAAGATGAAACCGAAGGTTCAAGACGAGAAGTGGAAGCTTTCCAGGCTGCCTTGAGTAGAGACATAGGAGGTGATGCGGCTGCTACATTCCAGACATCTGAATCAAATCCAGTTGTATGTCTTCTAAGTTCAAAGAGCGACCATACTGTTTGTTCCTCAGGATTACAAATGGAAGCTGCTAGCCAGAGTGGAAATGTTGACAGTCAGGTACAACCATCTCAGCAGGAACAGAATTCATCAGAAATACAGGTAAAGAAAGAGCCATTGAATATTGAGAAGCAGATATATAATAAAGTTCTCATAGCGCCACAGATGAAGCCCCAGGAAAATCACAACTATGAGGCAGCAGCAGATAGGGATCCCAATCAGATTTCTCAAGTGACTGGGGTTCCAGTGTCTGAAAGTAATCCAACACTTAACAATGAACCAGACAGAGTGTTCAATCGAGACAGTGAATCTCAATTCTTAAAACTTCAAAAGATGAGTAATCAACAAGCAACTATCTTAGATAGAACAAGCAACCAAAACAATCGTGGTGGTGGTAAGCAGGTTCCATTTGCTGTACTATTGCCTGTATTGTTGCCTCAGCTTGATAAAGACAGGGCAATGCAACTTCAAACTCTATTTAACAGGCTGAAGAAAAATGAAATTATAAAAGATGATTTTGTGCGGCTCATGAGAAGTGTTGTGGGAGATCAAATGCTCAGATTAGCTGTTTCTAAAGTTCATTTCCAGTCTGCCACCAACCATTTTCAGTTACAGACCCCACCTGCAGCACAGCAGCTCCCTCCAAGGATGGCCCCAATAAGTGCTGGTGCCACAAACTTGACTGATCGTCAATCATTTGCCCAACTTCATCAGAAAGGCGCCAACTCTTCTGCAATCTCAAATCTTCATTTATCAGCAGCCCAGGGACAACCTAATACTGGCTATGTTAAAACAGAAAACAGTGAAGAATCATCTCAAGAAGGAGGACGACAAAGTACTGGAAATCCTTTATCTTCTTCCATTTCAGGTGCTAATCAAGGTACTAGAAGAGAGCAATCATCAGCTACCATACAAGGATTAGAAAAGCCTCCGCAACAACAGATCCCATTTCAACAAAAAGCCTTTTCTATGTATGGAACAGGAAGCAATGCTAGCAATTATCAACCATCTTCAGGGTCAAGCATCACTACTTCCACATCATCTTTTAAATCGCCGTCCCAAGAGTTACAAATGAGGCAAGTTCCTCAACATCGGAGCATTTCAGCTCAATTAGGGGGGAGCCTGTCAGGCATGAACATGGTAAGTGTTCTAAAATTTGAAGGAAAATTTTATGGCCAACGTGGCAGCATAAAAGAAAACCAACTACTTAATTTACTGTTTTTCTCTTCTTTAACTTCTCAACAGGGTGACCAGGGAAGCGGAACAACTGGTTCGGCAAAGGATGAGTCTTCGGAAAAGCAGTCTTCTAAAATGGGTTTTACAACAACTATTGGTGGTCCTTCAACATCTGGAAATGTTTTTCCCTCAAGTACAGTTTCCCCAAATATAACCACGCAAGTGGACTCCAATGCCATGCTAGAATCTCGCAACCCTTCTATCACTGTAGCTTCTGGGGTTAATAGGACACCTCCAAAGAAACCTTCAGTGGGCCAAAAGAAACCACTTGAAACAGTTGGTGCTTCGCCACCTCCATCAAGCAAGAAACAAAAACTGGCTACCTTTTCGGATCAAAGCATCGAACATCTCAATGATGTTACTGCTGTCAGTGGAGTTAACATTAGGGAAGAAGAAGAACAATTGTTTTCTGGTGTAAAGGATGACCTTCGGGTATCAGAAGCATCACGTAGAGTTGTGCAAGAAGAAGAAGAAAGACTTATCTTGCAGAAGACTCCATTGCAGAAAAAGTTGTCTGAAATTATGGTAAAATGTGGTTTAAAAGGTATAAGCAAAGATGCTGAGAGATGTCTCTCGCTGTGTGTGGAAGAGCGAATGCGTGGTCTGATAACTAATTTAATCAGATTGTCAAAGCAGAGGGTTGATGTTGAATTGCCAAGACACAAAACTATTATCACCTCTGATGTACGGCATCGAATTATGATGATGAATTGGAAAGCAAAGGAAGAATGGGAGAAGAAACAGGCAGAAGTAGAAAAACTCAGGAAGCTTAACGAACCTGAGGACAGTAATGGAAATGCAGCTGACAAGGAGAAAGATGATGGTCGTACCAAGGCGGTTAAGGTAAACCGGGATCAAGATGACAAAATGAGGACAACAGCAGCAAATGTTGCTGCACGAGCCGCTGTTGGAGGAGACGACATGCTTTCAAAATGGCAGCTTATGGCTGAGCAAGCTCGACAGAAACGCGAAGGAGGCACAGATGGACATGGAGCATCGTCCTCCTCTCAGCCTGTTAAAGATGTTGCTCGCAAGCCTACATCGAATTTGGGTAGAAATTCAAATGACAGTCAAGAAGTAGAGAAAAAGGGGCCTACTAGAAAAATTGGTAGGAACCAAGTGATGGCGCCTCAGCCTGGAGTGGCAAGAAGTATCTGTGTTAAAGATGTGATTGCTGTTCTGGAAAGAGAACCCCAAATGTCTAAATCCACCATGCTGTATCGGCTGTATGAGAAGATTCGATCAGAGGGTAATGCTGATTAA 2691 42.55 MDPSIVKLLEDDEDWQDETEGSRREVEAFQAALSRDIGGDAAATFQTSESNPVVCLLSSKSDHTVCSSGLQMEAASQSGNVDSQVQPSQQEQNSSEIQVKKEPLNIEKQIYNKVLIAPQMKPQENHNYEAAADRDPNQISQVTGVPVSESNPTLNNEPDRVFNRDSESQFLKLQKMSNQQATILDRTSNQNNRGGGKQVPFAVLLPVLLPQLDKDRAMQLQTLFNRLKKNEIIKDDFVRLMRSVVGDQMLRLAVSKVHFQSATNHFQLQTPPAAQQLPPRMAPISAGATNLTDRQSFAQLHQKGANSSAISNLHLSAAQGQPNTGYVKTENSEESSQEGGRQSTGNPLSSSISGANQGTRREQSSATIQGLEKPPQQQIPFQQKAFSMYGTGSNASNYQPSSGSSITTSTSSFKSPSQELQMRQVPQHRSISAQLGGSLSGMNMVSVLKFEGKFYGQRGSIKENQLLNLLFFSSLTSQQGDQGSGTTGSAKDESSEKQSSKMGFTTTIGGPSTSGNVFPSSTVSPNITTQVDSNAMLESRNPSITVASGVNRTPPKKPSVGQKKPLETVGASPPPSSKKQKLATFSDQSIEHLNDVTAVSGVNIREEEEQLFSGVKDDLRVSEASRRVVQEEEERLILQKTPLQKKLSEIMVKCGLKGISKDAERCLSLCVEERMRGLITNLIRLSKQRVDVELPRHKTIITSDVRHRIMMMNWKAKEEWEKKQAEVEKLRKLNEPEDSNGNAADKEKDDGRTKAVKVNRDQDDKMRTTAANVAARAAVGGDDMLSKWQLMAEQARQKREGGTDGHGASSSSQPVKDVARKPTSNLGRNSNDSQEVEKKGPTRKIGRNQVMAPQPGVARSICVKDVIAVLEREPQMSKSTMLYRLYEKIRSEGNAD 896
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 735485 742566 - Bpe017427.3 Bpe05g00040 103817

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00040 896 MobiDBLite consensus disorder prediction 76 97 - -
Bpe05g00040 896 MobiDBLite consensus disorder prediction 390 421 - -
Bpe05g00040 896 Pfam RCD1-SRO-TAF4 (RST) plant domain 197 257 IPR022003 -
Bpe05g00040 896 CDD TAF4 588 884 IPR007900 GO:0005669|GO:0006352
Bpe05g00040 896 Gene3D Histone, subunit A 638 683 IPR009072 GO:0046982
Bpe05g00040 896 MobiDBLite consensus disorder prediction 477 581 - -
Bpe05g00040 896 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 4 68 890 IPR045144 GO:0005669|GO:0006352
Bpe05g00040 896 MobiDBLite consensus disorder prediction 477 552 - -
Bpe05g00040 896 MobiDBLite consensus disorder prediction 731 769 - -
Bpe05g00040 896 MobiDBLite consensus disorder prediction 793 852 - -
Bpe05g00040 896 ProSiteProfiles RST domain profile. 192 263 IPR022003 -
Bpe05g00040 896 MobiDBLite consensus disorder prediction 1 24 - -
Bpe05g00040 896 PANTHER IP01149P-RELATED 68 890 - -
Bpe05g00040 896 MobiDBLite consensus disorder prediction 804 831 - -
Bpe05g00040 896 MobiDBLite consensus disorder prediction 731 767 - -
Bpe05g00040 896 Pfam Transcription initiation factor TFIID component TAF4 family 593 885 IPR007900 GO:0005669|GO:0006352
Bpe05g00040 896 MobiDBLite consensus disorder prediction 320 378 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00040 K03129 TAF4; transcription initiation factor TFIID subunit 4 - tcc:18592004 821.231
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g667 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo17g00865 . . Bda01g01592 . Bpe05g00040 Bma01g00675 Bma05g00052 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004131 2 0 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 7 2 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00040 Bpe_Chr05 FPKM 48.691685 46.842735 47.986423 49.171932 15.23903 17.407856 15.67491 81.40799 86.313309 87.235107