Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00044 ATGCTCGCACGCGGTGGCCGGCCGGTTTCGTCTTTACCGGAAATTGAAGCTCCGTCGGCGGCGAAGCACATCTACAAGTGTTCTGTTTGTGACAAGGCGTTTTCTTCGTACCAGGCTTTGGGTGGACACAAGGCGAGCCACCGGAAACACGTCGGCGGAGAAGATCTATCGACGTCGTCTACGAACACGACGACCTCTGCTCTAACAGCAACCACCTCAGGCTCAGCTTCTATCGCCGGAGTAAGAACCCACGAGTGCTCTATTTGCCACAAGTCGTTCCCGACCGGCCAGGCTTTGGGCGGACACAAGCGCTGCCACTACGAAGGCGGCAATAAATCCAACAGCGCCACCTTGACCTCGTCAGAAGGAGCCGGCTGCTCCAGCCATATCCGCGGCTTCGATCTCAACCTCCCAGCTTTACCAGAATTCTCAGCGAAGTTCGTCGTCTCCGGCGACGACGAGGTAGAGAGTCCTCTTCCATCAAAGAAGCCCCGTCTTCTGATACCGCCAAAAATGGAAGTTTCTCAAGATCACTGA 537 55.87 MLARGGRPVSSLPEIEAPSAAKHIYKCSVCDKAFSSYQALGGHKASHRKHVGGEDLSTSSTNTTTSALTATTSGSASIAGVRTHECSICHKSFPTGQALGGHKRCHYEGGNKSNSATLTSSEGAGCSSHIRGFDLNLPALPEFSAKFVVSGDDEVESPLPSKKPRLLIPPKMEVSQDH 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 773304 773840 - Bpe017431.1 Bpe05g00044 103821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00044 178 Gene3D Classic Zinc Finger 23 106 - -
Bpe05g00044 178 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 106 IPR013087 -
Bpe05g00044 178 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
Bpe05g00044 178 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 169 IPR044653 GO:0003700
Bpe05g00044 178 ProSiteProfiles Zinc finger C2H2 type domain profile. 25 55 IPR013087 -
Bpe05g00044 178 PANTHER ZINC FINGER PROTEIN ZAT10 1 169 - -
Bpe05g00044 178 MobiDBLite consensus disorder prediction 151 178 - -
Bpe05g00044 178 ProSitePatterns Zinc finger C2H2 type domain signature. 27 47 IPR013087 -
Bpe05g00044 178 SMART c2h2final6 25 47 IPR013087 -
Bpe05g00044 178 SMART c2h2final6 84 106 IPR013087 -
Bpe05g00044 178 MobiDBLite consensus disorder prediction 45 67 - -
Bpe05g00044 178 Pfam C2H2-type zinc finger 84 107 - -
Bpe05g00044 178 Pfam C2H2-type zinc finger 25 49 - -
Bpe05g00044 178 SUPERFAMILY beta-beta-alpha zinc fingers 24 106 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00161 Bpe-Chr4:1047120 Bpe05g00044 Bpe-Chr5:773304 3.46E-63 dispersed
Bpe05g00044 Bpe-Chr5:773304 Bpe12g00739 Bpe-Chr12:12941951 1.53E-39 dispersed
Bpe02g00448 Bpe-Chr2:2936702 Bpe05g00044 Bpe-Chr5:773304 5.78E-63 wgd
Bpe02g01777 Bpe-Chr2:20099498 Bpe05g00044 Bpe-Chr5:773304 1.73E-92 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21405 PF13912 zf-C2H2_6 1.10E-12 CL0361 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00044 - - jre:109013979 203.756