Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00068 ATGGATCTCCGAGGCTTTATTGCTGCCCAAACCACCGTTTCCTTGAAAGTCGCGAAGCAGTTGCTTCTACACCAAGCCAAGGATTCGAATGTGGTGTTTTCGCCGCTGTCGATCCACGTCGTTCTCAGCCTCGTCGCCGCAGGTTCAGGCGGCGCCACCCGAGATCAGCTCCTCTCCTTCCTCAAATCCAAATCCATTGATCACCTGAACTCCTTTGCTTCCGAACTGGTTTCCCTTGTCTTCGCCGATGGCTCGTCCGCCGGTGGGCCTCGTCTCTCTTTCGCTAATGGGGTTTGGGTCGATCAGTCTCTTCCTCTCAAGCCTTCTTTCAAACAGGTGGTGGACACCGCCTATAAGGCTGCTCACTCTCAAGTTGATTTCCAGAACAAGGCTGTTGAAGTGGCTGGCGAAGTGAATTCTTGGGCAGACAAGGAGACAAGTGGACTAATCAAAGAGCTTCTTCCTGCTGGGTCGGTCAATAGCACTATGAGGCTCATCCTTGCAAATGCACTCTATTTCAAAGGCGCTTGGGACGAAAAATTCAATGCATCGGCGACGAAAGATCACGAGTTTTATCTTCTCGATGGAAGTTCAGTTCGTATTCCTTTCATGACGAGCAAGAAGAAGCAGTTTGTGGCCGCCTTTGATGGACTTAAAGTTCTCTCACTTCCATACAAGCAAGGCGAAGACAAACGCAGTTTCTCGATGTATGTCTTTCTCCCTGATTCGAAAGATGGATTGCCAGCTTTGGTTGAGAAAATTGGGTCCCAATCCGAGTTTCTAGAGCATCACCTTCCTTACGAACGCGTCGATGTAGGCGAATTTAGGATTCCTCGGTTTAAGGTTTCTTTTGGGTTTGAAGCTTCTGAGCTTCTTAAAGGATTAGGACTGGTTTTACCCTTCTCTGGTGAAGGCGGCCTGTCGGAGATGGTGGATTCTCCACTCGGCAGTAGCCTCTACGTATCCAAAATATTTCACAAGTCTTTCATCGAGGTTAACGAAGAAGGGACAGAAGCTGCGGCCGCCACTGCCGGTATGGTTGCTTTAAGGTCTATGTTCAGACAAGAGAAGATCGACTTTGTTGTCGACCATCCATTTCTGTTCATTATCAGAGAAAACGTCACCGGAACTCTTCTGTTCACCGGCCAAGTACTCAACCCCCTTGCAGGCTGCTGA 1176 49.15 MDLRGFIAAQTTVSLKVAKQLLLHQAKDSNVVFSPLSIHVVLSLVAAGSGGATRDQLLSFLKSKSIDHLNSFASELVSLVFADGSSAGGPRLSFANGVWVDQSLPLKPSFKQVVDTAYKAAHSQVDFQNKAVEVAGEVNSWADKETSGLIKELLPAGSVNSTMRLILANALYFKGAWDEKFNASATKDHEFYLLDGSSVRIPFMTSKKKQFVAAFDGLKVLSLPYKQGEDKRSFSMYVFLPDSKDGLPALVEKIGSQSEFLEHHLPYERVDVGEFRIPRFKVSFGFEASELLKGLGLVLPFSGEGGLSEMVDSPLGSSLYVSKIFHKSFIEVNEEGTEAAAATAGMVALRSMFRQEKIDFVVDHPFLFIIRENVTGTLLFTGQVLNPLAGC 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1204203 1206329 - Bpe017457.1 Bpe05g00068 103845

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00068 391 CDD serpinP_plants 10 387 - -
Bpe05g00068 391 Gene3D - 177 382 IPR042185 -
Bpe05g00068 391 SUPERFAMILY Serpins 5 387 IPR036186 -
Bpe05g00068 391 ProSitePatterns Serpins signature. 360 370 IPR023795 -
Bpe05g00068 391 PANTHER SERINE PROTEASE INHIBITOR, SERPIN 19 390 IPR000215 GO:0004867|GO:0005615
Bpe05g00068 391 SMART serpin2 15 387 IPR023796 -
Bpe05g00068 391 Pfam Serpin (serine protease inhibitor) 9 387 IPR023796 -
Bpe05g00068 391 PANTHER SERPIN-ZX-LIKE 19 390 - -
Bpe05g00068 391 Gene3D Antithrombin, subunit I, domain 2 28 334 IPR042178 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00068 K13963 SERPINB; serpin B - zju:107420342 573.163
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g831 . . . . . . . . Cmo05g00215 . . . . . Sed08g1817 . . Bhi04g00301 Tan02g1904 Cmetu03g1500 . Hepe10g0696 . Lcy13g2026 Cla08g01534 Cam08g2027 Cec08g1603 Cco08g1738 Clacu08g1716 . Cre08g1499 . . Cone17ag1302 . . Csa04g02371 . Cme03g02000 Blo17g00830 . Bda08g01319 . . Bpe05g00068 . . . . . . Cma05g00209 . . Cpe11g00174 . . . . . . . . . . . . . . . Lsi08g01436 Csa02g02005 Chy07g00100 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000825 2 1 6 2 1 2 0 2 2 4 1 2 3 4 4 7 2 3 2 2 4 1 2 5 5 4 4 7 5 1 90
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00068 Bpe_Chr05 FPKM 8.575135 9.047283 12.245263 11.931071 5.965907 7.134692 6.589597 19.950256 23.192039 20.208939