Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00079 ATGGATTCAAGCACCGCCGCAACGACGTCGACTCCGACGAGCTCGAAAATTCCTCTTCCAGCAGCCTCCAAGGAGAAAGACTTTTTGAACCACCTCGAAGCTTACCTCGCCAAAAGAGATGGCGTGGACAAGCTCCTCAAGATCTCCAGGTACGCTACCAAAATCATTCTCGCCTCTTCCGTCTTGCCCGAATCCTTACCCCTCACTTCCCGCCTCAAGAGCTTCGAATCCAGCGTCGGAGTTAGTCGCAAGGCTTTCAGGCTGGGAAAGTTCGTCCAAGATCTTAATGCTCTCAGAAATTCACGTTTTGATTCGAAACAAAACTTCGTTCTCGCTATGATTGCGTATGGGGGGGAGGGTCTTTACTATTTTGTTGAACAGTTTGTTTGGTTGGCTAAATCTGGTTTGATCGACAACAAGCACTCCCGCAGTTTGCAAAAGATCAGTGCTTGGGCCGAGTTTGTCGGATACCTGGGGAGTATTTCGTTGAAATTCATTGATTTGAGACTGATTAACGAAGATGAAGCATGTTTAAAATCAAGTATTGAATTAATGTTAGCTAAGGGACTTGTGCACCAGGAAGAAACAAGGAAAATGAAAAAGTTGCAGGAGAAGAAGTTGATGAAAAAGCTGTCGATCATTCAAGATTTTGCAGATGGATTAATGTCTTTTTCAGACATCCGAGACAATAAGGGCGGCCTGGTGTCCCGTCCATTACTCTTGTCCTGTGCGGGTCTTTTGTCGGCATTGATTAGCACTCATAAGAATTGGATATCTTGCTGA 783 45.34 MDSSTAATTSTPTSSKIPLPAASKEKDFLNHLEAYLAKRDGVDKLLKISRYATKIILASSVLPESLPLTSRLKSFESSVGVSRKAFRLGKFVQDLNALRNSRFDSKQNFVLAMIAYGGEGLYYFVEQFVWLAKSGLIDNKHSRSLQKISAWAEFVGYLGSISLKFIDLRLINEDEACLKSSIELMLAKGLVHQEETRKMKKLQEKKLMKKLSIIQDFADGLMSFSDIRDNKGGLVSRPLLLSCAGLLSALISTHKNWISC 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1391226 1392008 + Bpe017468.1 Bpe05g00079 103856

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00079 260 PANTHER PEROXISOMAL MEMBRANE PROTEIN 11A 22 260 - -
Bpe05g00079 260 Pfam Peroxisomal biogenesis factor 11 (PEX11) 29 257 IPR008733 GO:0005779|GO:0016559
Bpe05g00079 260 PANTHER PEROXISOMAL BIOGENESIS FACTOR 11 22 260 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00079 - - - tcc:18591345 365.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00084 Bpe-Chr3:1344264 Bpe05g00079 Bpe-Chr5:1391226 4.12E-27 dispersed
Bpe05g00079 Bpe-Chr5:1391226 Bpe14g00996 Bpe-Chr14:7354494 1.09E-07 dispersed
Bpe05g00079 Bpe-Chr5:1391226 Bpe04g01162 Bpe-Chr4:12432066 4.80E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g902 . . . . . . . . Cmo05g00235 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe05g00079 . Bma05g00109 . . . . . . . Cpe11g00188 . . . . . . . . . . . . . . . . Csa02g02033 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004435 1 1 1 1 1 2 2 2 2 1 1 2 2 1 1 2 2 1 2 2 1 1 1 1 1 1 1 2 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00079 Bpe_Chr05 FPKM 8.054701 8.414865 8.848074 9.722262 13.342443 15.501773 12.307341 15.450054 13.320135 13.228369