Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00093 ATGTCCCAAAGGTTCATCCACTCTACCCCAGAAACTACGCAGAGCTACTCGGCCACTAGTGCAAAGCCCGATTTTGACGAAGCAGAGATGGATGACGGAACTATGAACGAGTTTTTGTCTCGATTTGTTTGGATAATGCGTAAGAAGCTTTTGGAAGAGTTCCAATGCGACAAGCAAACAATTGATGGTATGCTATTGATTATAGTTGAGAAAGTGGTTTCAGAAATGGAGAAGGGTAGTATAGAACAGATGCTTGCAACACCTACGGCTTCTCTATCTCAAGATTTCAGTGAGGATTTGTGGAAGATAGTGTGGGAAGTCAGCAACATGGTTTTGGCTGATATGGAAAAGGCGAGTAAGAAGGAGAAAATGAAGAAGTTTTCGCTATCTGAGGATGTGCAAGACATGTGTAGGTTTGCTGGGGAAATCGGCATTCGAGGAGATCTTCTTAAAGAGCTCAGATTCAAATGGGCTCAGGATAAAATGGAGGAGAGTGAGTTTTATGAGAGTTTAGAGCGACTAAGAGAGCAGGCAGCTCAAGAAGAGGTGGAGGAAAGAGGCGAGGAAAGAACAACCGTGCATGACGAGGTTGCTGGAGCTGAAGAAAAAGCAAAGGCTGTGTCTCTTCCTAAGAGAAAAGGGAAGATAAGGTACAAAATTTATGGTCTTGATCTATCCCATCCTAAGTGGACGAAAGTTATGGAAAATATTCAAGAGTCAAGTGCCGTTCTGTGGCCACAGGAGCCAAAATCAATTTCTGGTAAATGCAAACTGGTTACTGAAAGAATTCTTTCATTGAGTGAGGAGAATGATCCATCGCCTTATCTGGTTGAATGGATAGAGCTTCTTCAACCAAGGAGGGTTGATTGGATATCTTTGCTTGATAGATTGAAGGAGAAGAACATGTGTTTATATTTGAAGGTTGCAGAACTTGTATTAACCGAAGAGTCTTTCAATACCGATACTAGTGATTACTCGAAGCTCATCAGGATTCATGCCAATGAAAACCGGCTTGAGGATGCTGAAAGAATTCTTAAGAAGATGAATGAGAAGGGCATTGTGCCGGATGTACTGACCGTCAATGTTTTAGTTCACATGTATAGCAAGGCAGGCTATTTGGACCGTGCGAAGGAAGCGTTGGAGAGCTTGAAGAGCCAAGGTTTCCAACCAGATGAGAAGGTTTACCACTCAATGATAATGGCCTATGTTAATGCTGGGCAAGCTAAGTTGGGCGAGTTGTTGATGAGAGAAATGGAGGCGATGGACATTAAACCGACACCTGAAATTTACATGGCACTGCTCAGATCATTTTCGCAAAGTGGTGATTTTGCTGGGGCTGAAAAAATCACCAACATTATGCAGTTTGCTGGGATCCAGCCGAGTCTGGAGTCATGTACTTTACTTGTTGAGGCATATGCACAAGCTGGTAAGCCTGCTGAAGCAAGAAACAACTTTGACTACATGATAAAAATTGGACATAGGCCCGATGATAGGATTACTGCAAGTATGATTGCGGCATATGAGAAGAATAATCTATTGGATAAGGCACTAAATCTTTTGCTGCAGCTGGAAAAGGATGGCTTTGAGCCTGGGGTTGCAACTTACACTGTTCTTGTAGATTGGCTGGGTAAAATGCAATTGGTGGATGAGGCTGAGCAGCTACTTGGCAAGATAGCCGAGCTGGGTGAGGCTCCTCCTCTCGAGCTCCAAGTAAGCCTTTTTGATATGTACTTGAAGGCTGGAAATGAGAAAAAGACTCTTCAAGCTCTAGGGATTCTTGAATCTAAGAAGGAACAATTGAAGGCTGATAGTTTTGAGAGGATTATAAAGGGCCTCATAGATGGTGCACTTTTCAAGGATGCTCAGAGAATGTATCAATTTATGGAAGCACAAGGTTATATTCCCTCTAAAGCCATTACGGTGGCCTTGAAGGGATCTCACATTACCTTCATGGGATCTCAAGCCACCCGTAGCAAGAGATTTTCTTCATTTAGATAA 1998 42.89 MSQRFIHSTPETTQSYSATSAKPDFDEAEMDDGTMNEFLSRFVWIMRKKLLEEFQCDKQTIDGMLLIIVEKVVSEMEKGSIEQMLATPTASLSQDFSEDLWKIVWEVSNMVLADMEKASKKEKMKKFSLSEDVQDMCRFAGEIGIRGDLLKELRFKWAQDKMEESEFYESLERLREQAAQEEVEERGEERTTVHDEVAGAEEKAKAVSLPKRKGKIRYKIYGLDLSHPKWTKVMENIQESSAVLWPQEPKSISGKCKLVTERILSLSEENDPSPYLVEWIELLQPRRVDWISLLDRLKEKNMCLYLKVAELVLTEESFNTDTSDYSKLIRIHANENRLEDAERILKKMNEKGIVPDVLTVNVLVHMYSKAGYLDRAKEALESLKSQGFQPDEKVYHSMIMAYVNAGQAKLGELLMREMEAMDIKPTPEIYMALLRSFSQSGDFAGAEKITNIMQFAGIQPSLESCTLLVEAYAQAGKPAEARNNFDYMIKIGHRPDDRITASMIAAYEKNNLLDKALNLLLQLEKDGFEPGVATYTVLVDWLGKMQLVDEAEQLLGKIAELGEAPPLELQVSLFDMYLKAGNEKKTLQALGILESKKEQLKADSFERIIKGLIDGALFKDAQRMYQFMEAQGYIPSKAITVALKGSHITFMGSQATRSKRFSSFR 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1633122 1635511 - Bpe017481.1 Bpe05g00093 103870

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00093 665 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 461 495 IPR002885 -
Bpe05g00093 665 Coils Coil 331 351 - -
Bpe05g00093 665 PANTHER OS07G0661900 PROTEIN 2 649 IPR044657 -
Bpe05g00093 665 TIGRFAM PPR: pentatricopeptide repeat domain 325 357 IPR002885 -
Bpe05g00093 665 TIGRFAM PPR: pentatricopeptide repeat domain 359 392 IPR002885 -
Bpe05g00093 665 TIGRFAM PPR: pentatricopeptide repeat domain 394 426 IPR002885 -
Bpe05g00093 665 Pfam PPR repeat 502 528 IPR002885 -
Bpe05g00093 665 Pfam PPR repeat 534 562 IPR002885 -
Bpe05g00093 665 Pfam PPR repeat 464 492 IPR002885 -
Bpe05g00093 665 Coils Coil 168 191 - -
Bpe05g00093 665 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 391 425 IPR002885 -
Bpe05g00093 665 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 356 390 IPR002885 -
Bpe05g00093 665 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 531 565 IPR002885 -
Bpe05g00093 665 Pfam Pentatricopeptide repeat domain 414 462 IPR002885 -
Bpe05g00093 665 Gene3D Tetratricopeptide repeat domain 436 660 IPR011990 GO:0005515
Bpe05g00093 665 MobiDBLite consensus disorder prediction 1 21 - -
Bpe05g00093 665 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 321 355 IPR002885 -
Bpe05g00093 665 Pfam Pentacotripeptide-repeat region of PRORP 321 409 IPR033443 -
Bpe05g00093 665 Gene3D Tetratricopeptide repeat domain 280 410 IPR011990 GO:0005515
Bpe05g00093 665 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 426 460 IPR002885 -
Bpe05g00093 665 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 496 530 IPR002885 -
Bpe05g00093 665 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 5, MITOCHONDRIAL 2 649 - -
Bpe05g00093 665 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00093 - - - jre:108991722 866.685
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00844 Bpe-Chr4:5567121 Bpe05g00093 Bpe-Chr5:1633122 1.36E-58 dispersed
Bpe05g00093 Bpe-Chr5:1633122 Bpe05g00504 Bpe-Chr5:19236964 2.63E-16 dispersed
Bpe05g00093 Bpe-Chr5:1633122 Bpe05g00177 Bpe-Chr5:6702620 3.87E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g957 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1917 Cone7ag1828 . . . . . . Blo17g00795 . Bda08g01279 . . Bpe05g00093 . . . . . . . . . Cpe11g00210 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010753 0 1 1 0 1 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 0 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00093 Bpe_Chr05 FPKM 19.477962 20.838667 3.517113 4.419266 2.93597 3.158266 2.716522 18.417866 19.024651 20.501612