Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00117 TTCTTTTGCAGTGACTTTCCTATCCATAGTATTTATCGTATCAGAAGGTTCTCTGAAAACCATAGTTTCAACGCAATCAAATGTAGACTTGCAAAGCCCAAGGAGTCTCCTTCAAAAGCTGCTACATTTACAAAGGAACCTCACAAGTTTTTTGATCAGGCAATAATCACAGTTCGGTCAGGAGACGGAGGCCATGGGGCAATTCTCAGTTTGCCTAACCAACAATCGAGTAAGTCACATGTTACACATGCCAGCGAAAAGACAAAGAGAAAGATCTCGTACAAAAGGGATTTTGATGGGTCGCTGATTCTTCCAAGTGGTGGGCGTGGTGGAGACGTTGTAATCTTTGCAGACGAGGGGAAAGATTCATTGCTGGAGTTTCATACGAAAATTCGTCATAATGCAAAACGTGGTGGAAACGTTGATGCAATGGGTGTCTTGACTTCACAATTACATGACGGATTTAATGGTCCAAACCTTCGCATTCCTGTACCCTTAGGTACAGTTGTAAGACTAAAAAAGGGGAAATTATTGGCCGATCTAGAGCATCCAGGTGATGAAGTTGTTGTTGCCAGAGGTGGACAAGGAGGGACTAGCCTGGTTGAAATGCCTGAGCATAGAAGGAAAAAGTTGATGGCTTTAACTGCAAATGTGATGAGGGATGAAAGTGACAAGGTTTTAGTTATTGGTCAACCGGGGGAAGAAGTCAGTTTGGAGTTTATTCTCCGAGTTGTTGCTGATGTTGGTCTCGTTGGACTTCCAAATGCTGGGAAATCAACTCTTTTGGCAGCTATTACAAAAGCAAAACCTGATATTGCTGATTATCCTTTCACAACATTAATGCCAAACCTTGGTCGCCTTGAAGGGGATCCTACTCTTGGGGCTGGAATGTATTTATCAGAAGCAACATTAGCAGATTTGCCTGGCCTTATTGAAGGTGCTCACTTGGGAAAGGGTCTTGGTCGAAATTTCTTGAGGCACTTGAGAAGAACTCGACTCTTAGTCCACATTGTTGATGCTGCTGTTGGGAACCCCATAGAAGATTACAAAACTGTCAAAGAAGAGTTACGGATGTACAATCCTAATTACCTTGAACGACCATATATCGTGGTGTTAAACAAAATTGACCTTCCTGAGGCAAGAGAGAGACTTTCATTTTTGATAGAGGAGATAGCAAATATTGGAAGTGATATAGTAGCTTCTAAGTCAGAAATGAACTTTGAGGATACTGATCAATTGTCACCATCAAAAGGTCGTCATTCAGATGTTGAAATAAAGAATAAAAACATCGAAGACTATCCCCGACCACTTTCTGTTGTAGGAGTCAGTGTCCTGAAAGGTATGGGGTTGAATGAGATGTTGAAGGAGATAAGAACAGCCTTAAGGAAGTGCAGGGAT 1398 41.92 FFCSDFPIHSIYRIRRFSENHSFNAIKCRLAKPKESPSKAATFTKEPHKFFDQAIITVRSGDGGHGAILSLPNQQSSKSHVTHASEKTKRKISYKRDFDGSLILPSGGRGGDVVIFADEGKDSLLEFHTKIRHNAKRGGNVDAMGVLTSQLHDGFNGPNLRIPVPLGTVVRLKKGKLLADLEHPGDEVVVARGGQGGTSLVEMPEHRRKKLMALTANVMRDESDKVLVIGQPGEEVSLEFILRVVADVGLVGLPNAGKSTLLAAITKAKPDIADYPFTTLMPNLGRLEGDPTLGAGMYLSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRLLVHIVDAAVGNPIEDYKTVKEELRMYNPNYLERPYIVVLNKIDLPEARERLSFLIEEIANIGSDIVASKSEMNFEDTDQLSPSKGRHSDVEIKNKNIEDYPRPLSVVGVSVLKGMGLNEMLKEIRTALRKCRD 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2366563 2370779 + Bpe025788 Bpe05g00117 103894

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00117 466 PRINTS GTP1/OBG GTP-binding protein family signature 269 287 IPR006073 GO:0005525
Bpe05g00117 466 PRINTS GTP1/OBG GTP-binding protein family signature 321 339 IPR006073 GO:0005525
Bpe05g00117 466 PRINTS GTP1/OBG GTP-binding protein family signature 304 319 IPR006073 GO:0005525
Bpe05g00117 466 PRINTS GTP1/OBG GTP-binding protein family signature 248 268 IPR006073 GO:0005525
Bpe05g00117 466 PANTHER GTP-BINDING PROTEIN OBGC2-RELATED 29 466 - -
Bpe05g00117 466 Gene3D GTP1/OBG domain 49 244 IPR036726 -
Bpe05g00117 466 SUPERFAMILY Obg GTP-binding protein N-terminal domain 49 209 IPR036726 -
Bpe05g00117 466 CDD Obg 246 413 IPR031167 GO:0005525
Bpe05g00117 466 Gene3D - 245 466 IPR027417 -
Bpe05g00117 466 ProSitePatterns GTP1/OBG family signature. 306 319 IPR006074 GO:0005525
Bpe05g00117 466 Pfam 50S ribosome-binding GTPase 247 374 IPR006073 GO:0005525
Bpe05g00117 466 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 247 461 IPR027417 -
Bpe05g00117 466 TIGRFAM small_GTP: small GTP-binding protein domain 247 391 IPR005225 GO:0005525
Bpe05g00117 466 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 246 462 IPR031167 GO:0005525
Bpe05g00117 466 ProSiteProfiles Obg domain profile. 48 245 IPR006169 -
Bpe05g00117 466 Pfam GTP1/OBG 106 212 IPR006169 -
Bpe05g00117 466 PANTHER DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED 29 466 IPR045086 GO:0003924|GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00117 - - - jre:108991389 674.855
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00117 Bpe-Chr5:2366563 Bpe14g00873 Bpe-Chr14:6505374 4.35E-06 dispersed
Bpe03g00669 Bpe-Chr3:26873578 Bpe05g00117 Bpe-Chr5:2366563 2.38E-09 transposed
Bpe11g00388 Bpe-Chr11:2955926 Bpe05g00117 Bpe-Chr5:2366563 7.82E-10 transposed
Bpe11g01067 Bpe-Chr11:8015701 Bpe05g00117 Bpe-Chr5:2366563 1.41E-06 transposed
Bpe14g01139 Bpe-Chr14:8490580 Bpe05g00117 Bpe-Chr5:2366563 6.97E-53 transposed
Bpe04g00226 Bpe-Chr4:1520395 Bpe05g00117 Bpe-Chr5:2366563 3.34E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1023 . . . . . . . . . . . Cma09g00127 . . . Cpe06g00087 . . . . . . . . . . . . . . . Cone4ag1943 Cone7ag1857 . . . Csa03g04248 . . . . . . . Bpe05g00117 . Bma05g00141 . . Cmo09g00124 . . . Car09g00113 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011355 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00117 Bpe_Chr05 FPKM 0.020115 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0