Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00118 ATGGATGTGGGTGGGAATAGGCAACAGGTGAAGAAGGTGAAGCCTGCGCAGGCTAGTTCTAGGAAAGGTTGCATGAGAGGCAAAGGCGGGCCTGAAAATGCGACCTGCACTTACAAAGGCGTCCGGCAGAGAACTTGGGGCAAATGGGTCGCTGAAATTCGCGAACCCAATAGAGGAAATCGCCTCTGGTTAGGCACGTTTGACACTTCTCATGAAGCAGCTGTGGCCTACGATGCTGCCGCTCGTAAACTATACGGCTCCAATGCAAAGCTGAATTTGCCGGATCTGTGCCTTACCCATCATTATCCACTCAATTCTGCTGATACCCAGATGAGCCAAATAAACTTCCAGCCTCAGTTATTGTTTGATTCAGACGCTGTTTCTTCTTCTACTTCACTCTACGATGCTGGCTCTATCTCGTCTTCTTCTTATGAAAATGGCGATTCTTGTGGAGACAAGGTTGGCAATTGTGGCAAGCAACTCGGTGAGGGGATTGAAGGGCTATGGAGGAGCATGAGCTTGAGCTTTGACGACTCCTTGTGGGCAGAAGCTGCAATGTCTTTGAACTTTCCAGTAATGGAAGACGATGGAAGAGGGTTGGACAGTTTACAATATTGGTGCATGTAA 627 48.48 MDVGGNRQQVKKVKPAQASSRKGCMRGKGGPENATCTYKGVRQRTWGKWVAEIREPNRGNRLWLGTFDTSHEAAVAYDAAARKLYGSNAKLNLPDLCLTHHYPLNSADTQMSQINFQPQLLFDSDAVSSSTSLYDAGSISSSSYENGDSCGDKVGNCGKQLGEGIEGLWRSMSLSFDDSLWAEAAMSLNFPVMEDDGRGLDSLQYWCM 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2391279 2391905 + Bpe017503.1 Bpe05g00118 103895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00118 208 PRINTS Ethylene responsive element binding protein signature 60 76 IPR001471 GO:0003700|GO:0006355
Bpe05g00118 208 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Bpe05g00118 208 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
Bpe05g00118 208 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D-LIKE 5 198 - -
Bpe05g00118 208 SUPERFAMILY DNA-binding domain 37 95 IPR016177 GO:0003677
Bpe05g00118 208 Gene3D AP2/ERF domain 37 95 IPR036955 GO:0003700|GO:0006355
Bpe05g00118 208 CDD AP2 36 96 IPR001471 GO:0003700|GO:0006355
Bpe05g00118 208 Pfam AP2 domain 37 86 IPR001471 GO:0003700|GO:0006355
Bpe05g00118 208 MobiDBLite consensus disorder prediction 1 29 - -
Bpe05g00118 208 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 5 198 - -
Bpe05g00118 208 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe02g00370 Bpe05g00118 CCT
Bpe04g00227 Bpe05g00118 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g01125 Bpe-Chr3:30318381 Bpe05g00118 Bpe-Chr5:2391279 1.64E-28 dispersed
Bpe05g00118 Bpe-Chr5:2391279 Bpe04g01755 Bpe-Chr4:23209785 1.06E-28 dispersed
Bpe02g00370 Bpe-Chr2:2433806 Bpe05g00118 Bpe-Chr5:2391279 2.86E-50 wgd
Bpe04g00227 Bpe-Chr4:1534337 Bpe05g00118 Bpe-Chr5:2391279 2.85E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21411 PF00847 AP2 2.40E-14 CL0081 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00118 - - dzi:111312767 241.506