Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00142 TTTGATCAGATCTTTCCGGTTTTTTTCATTCTTTTATCTTGTTTTGAAGGTATTTCAGGGGCTTTATTTACCATAGTAAACGAATGCCAGTTCACTGTATGGCCTGGAGTTCTCGGAAACTCACAGTTGGAGACCACCGGCTTCGAACTCCGACAGGGAGGCTCCCGCTCTTTCCAGCTCCCACCGGGCTGGTCAGGTAGAGTCTGGGGGAGATCCGGTTGTACATTTGACCAGAGTAGCGGCCAGGGTAGCTGCCTCACCGGCCACTGCGGCTCCAACCAGATTGAATGCAACGGTTACGGAGCGATCCCACCTGCAACTTTGGTGGAGTTCACTATAGGGTCCGGTACAACCCTGGACTTTTACGATGTGAGCTTAGTCGACGGCTACAATCTCCCCATTATCGTCGAACCCTCAGGGGGGTCGGGTTCGTGTATGTCAACCGGATGCGTGACCGACTTAAATCTCCGGTGCCCGGCAGAGCTGCGATCAGGAGAGGGAACTGCGTGTAGAAGCGCGTGTGAAGCGTTCGGGAATCCTGAATACTGCTGCAGCGGCGCGTACGGTTCACCGGCGACCTGTAAGCCGTCGATCTACTCGGCGATTTTCAAATCGGCTTGTCCGAGATCGTATAGCTACGCTTATGACGATGCGACGAGCACATTTACGTGCGGTGGAGCCGATTACAGTATTACATTCTGCCCTTCGTCATCAAGGCAAGCTTCCTTTCCTTTCTCCTATTCTCTCCCTTTTCGATTTTCTTTTCTTTAA 771 52.14 FDQIFPVFFILLSCFEGISGALFTIVNECQFTVWPGVLGNSQLETTGFELRQGGSRSFQLPPGWSGRVWGRSGCTFDQSSGQGSCLTGHCGSNQIECNGYGAIPPATLVEFTIGSGTTLDFYDVSLVDGYNLPIIVEPSGGSGSCMSTGCVTDLNLRCPAELRSGEGTACRSACEAFGNPEYCCSGAYGSPATCKPSIYSAIFKSACPRSYSYAYDDATSTFTCGGADYSITFCPSSSRQASFPFSYSLPFRFSFL 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3708511 3709281 + Bpe017529.1 Bpe05g00142 103919

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00142 256 ProSiteProfiles Thaumatin family profile. 20 235 IPR001938 -
Bpe05g00142 256 SMART tha2 23 235 IPR001938 -
Bpe05g00142 256 PANTHER THAUMATIN-LIKE PROTEIN 1 13 242 - -
Bpe05g00142 256 Pfam Thaumatin family 27 235 IPR001938 -
Bpe05g00142 256 Gene3D Thaumatin 21 235 IPR037176 -
Bpe05g00142 256 PANTHER OS03G0233200 PROTEIN 13 242 IPR001938 -
Bpe05g00142 256 SUPERFAMILY Osmotin, thaumatin-like protein 22 236 IPR037176 -
Bpe05g00142 256 PRINTS Pathogenesis-related protein signature 120 136 IPR001938 -
Bpe05g00142 256 PRINTS Pathogenesis-related protein signature 225 234 IPR001938 -
Bpe05g00142 256 PRINTS Pathogenesis-related protein signature 46 55 IPR001938 -
Bpe05g00142 256 PRINTS Pathogenesis-related protein signature 22 34 IPR001938 -
Bpe05g00142 256 PRINTS Pathogenesis-related protein signature 67 78 IPR001938 -
Bpe05g00142 256 CDD TLP-PA 23 234 - -
Bpe05g00142 256 PIRSF PR5 3 249 IPR001938 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00142 - - - jre:109003887 384.03
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe04g00250 Bpe05g00142 CCT
Bpe04g00250 Bpe05g00142 ECH
Bpe02g01730 Bpe05g00142 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00142 Bpe-Chr5:3708511 Bpe15g00474 Bpe-Chr15:16079990 8.44E-80 dispersed
Bpe13g00412 Bpe-Chr13:11815395 Bpe05g00142 Bpe-Chr5:3708511 2.19E-53 dispersed
Bpe07g00722 Bpe-Chr7:13780997 Bpe05g00142 Bpe-Chr5:3708511 1.82E-57 transposed
Bpe02g01730 Bpe-Chr2:19741008 Bpe05g00142 Bpe-Chr5:3708511 1.17E-87 wgd
Bpe02g00343 Bpe-Chr2:2249606 Bpe05g00142 Bpe-Chr5:3708511 9.20E-44 wgd
Bpe04g00250 Bpe-Chr4:1672685 Bpe05g00142 Bpe-Chr5:3708511 9.12E-93 wgd
Bpe05g00142 Bpe-Chr5:3708511 Bpe06g00130 Bpe-Chr6:2250709 1.15E-84 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1131 . Blo12g00882 . . . Bpe04g00250 . Bma01g02374 Cmo05g00315 . . Cma09g00098 . . . Cpe06g00061 . Bhi04g00140 Tan02g2082 . . Hepe10g0674 . Lcy13g1906 Cla08g01416 . Cec08g1472 Cco08g1605 Clacu08g1587 . Cre08g1370 . . Cone17ag1411 . Lsi04g01754 Csa03g04288 Chy04g00408 Cme03g01872 . . . . Bpe02g01730 Bpe05g00142 . Bma05g00168 Sed01g2481 . Cmo09g00095 Cma12g00403 Cma05g00313 Car05g00260 . Cpe11g00261 . Bhi09g02077 Tan01g5034 Cmetu04g3133 . Hepe01g1607 Mch11g0107 . Cla05g01863 Cam05g1992 Cec05g2004 Cco05g2062 Clacu05g1984 Cmu05g1865 Cre05g1989 Lsi08g01311 Csa02g02142 Chy03g01376 Cme04g00460
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000476 2 3 3 3 2 4 4 4 4 5 4 4 6 4 4 5 4 4 4 4 4 4 4 4 4 4 3 5 4 3 116
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00142 Bpe_Chr05 FPKM 111.319695 115.281319 29.474243 27.008089 94.606247 94.593178 87.992386 30.274155 30.516382 30.705708