Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00145 ATGGCTGATATTCCCTCTGGCACACCGGTAGAAGCTGTTTCACAGCAAGATTCGTCAGAATATTGGTGCTATCACTGCGATAAACAGGTTATTGTTGAAACCCTTGCTAACCCCCCTGACATCATCTGCCATGAGTGCAAGAACGGCTTTGTGGAGTCCATTCCTGCGCGACAACGTCAATCGTCCGATTCAGCTTCTAGATCGTATGAGCAGATTGATGATCCTTCTTTCGAATTACAGCTCCTCCAGGCGCTGCGGTCGATTGCTCAGACGTTGCGTGACCGTGACGCGACGACTCCACCGACTCAGACCTACCCTCCGGAGGATGATTTTCTAAGGATTGAGCTGGAAGGGTGGGATAACGATGAAGATGATGAGTATACGAACAGATTCGAGCTGCCTGACGAACACGAGGAAGGGAATATTGAGGGAGATGGAGATAGATCTGAAAACGAGGAAGGAGGAAATCAAGATCAGGAAAATAGAGAGGAAGAGGATGTTAGGCGAACGCGACGTGATGCTCTTCGTCTCCGATTTCAAGACTTTGTGACCATGCCTCGCAGTGGGAGGAACCGGATCTTGGATTGGGCCGAGATATTGATGGGTGGAGGGGAAAACTCCGTTGAGTTTCATCTCGAAGTTCCAGAATCGGATAGATACGTCACCAACCCTGAAGATTATGTGGATGCAGCTGGATACGAGGCTCTTCTGCAAACGTTGGCAGAGAGCGATGGTGGAAGGAGAGGGGCACCGCCTGCGTCTAAATCAGTCATATCAGCCCTACCTATCGTAGAGATAGCTTCTGATGAAGCGGCTATACTTTGCTCCGTCTGTAAGGATATGATCAATGCTGGTGAAATGGCGAAGAAACTACCCTGTGGTCATGGCTACCATGGCGATTGCATAGTTCCTTGGTTGTCTTCTCGGAATTCTTGCCCCGTTTGTAGGTTTGAGCTTCAGACTGATGATCCAGAATACGAAGAGGAGAGAAAGAAAAGAGAGAGGGCCAATGGTGGCGAATCTTCTGGTTCTGGTGGAGAGATTTCGGGTTGGCAT 1056 49.34 MADIPSGTPVEAVSQQDSSEYWCYHCDKQVIVETLANPPDIICHECKNGFVESIPARQRQSSDSASRSYEQIDDPSFELQLLQALRSIAQTLRDRDATTPPTQTYPPEDDFLRIELEGWDNDEDDEYTNRFELPDEHEEGNIEGDGDRSENEEGGNQDQENREEEDVRRTRRDALRLRFQDFVTMPRSGRNRILDWAEILMGGGENSVEFHLEVPESDRYVTNPEDYVDAAGYEALLQTLAESDGGRRGAPPASKSVISALPIVEIASDEAAILCSVCKDMINAGEMAKKLPCGHGYHGDCIVPWLSSRNSCPVCRFELQTDDPEYEEERKKRERANGGESSGSGGEISGWH 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4183943 4184998 + Bpe025793 Bpe05g00145 103922

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00145 352 MobiDBLite consensus disorder prediction 123 169 - -
Bpe05g00145 352 Pfam zinc-ribbon 20 54 IPR039525 GO:0061630
Bpe05g00145 352 SMART ring_2 275 315 IPR001841 -
Bpe05g00145 352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 322 IPR013083 -
Bpe05g00145 352 ProSiteProfiles Zinc finger RING-type profile. 275 316 IPR001841 -
Bpe05g00145 352 MobiDBLite consensus disorder prediction 323 338 - -
Bpe05g00145 352 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 35 346 - -
Bpe05g00145 352 SUPERFAMILY RING/U-box 270 322 - -
Bpe05g00145 352 MobiDBLite consensus disorder prediction 323 352 - -
Bpe05g00145 352 MobiDBLite consensus disorder prediction 130 169 - -
Bpe05g00145 352 Pfam Zinc finger, C3HC4 type (RING finger) 275 315 - -
Bpe05g00145 352 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 35 346 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00145 - - - twl:120009534 419.083
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00145 Bpe-Chr5:4183943 Bpe11g00036 Bpe-Chr11:262667 3.22E-31 dispersed
Bpe05g00145 Bpe-Chr5:4183943 Bpe11g01192 Bpe-Chr11:8894964 2.24E-33 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1135 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1413 Cone20ag0070 . . . . Blo17g00233 . Bda08g01214 . . Bpe05g00145 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0017293 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 6
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00145 Bpe_Chr05 FPKM 68.473251 67.066986 78.110649 74.258194 40.460373 41.656433 38.102184 179.709839 188.513245 190.674698