Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00164 ATGCTTCTTTCTTGGCGATCTCTTTTTCGGGTACCCTCTATCAACCGCTCTTACTTCTACAACGCCTGTCGCCTTCATCATATTCCACTGATTCTAGGCAAGTTCTTCGCTAGTTCAATGTCTCGAAGCGATCTTCTTTGTCGGTCCCCTCTTCTCCAAACGCTGCCTCTTACAAACTCGGAGGCTCTTATATCTGCTTTAGTTGCGGCTGTAAGCTCCTGTAATTCCGTTTGTTATTGCCGTGGCATCCATGCCAGAGCTATGAAATCTGTAAATTATAGAGATGGATTCATCGGGGATCAGTTGGCTTTTCGCTACGTGAAGTTGGGATACCCGGAAGATGCACAGAAGCTGTTCGAAGAAATTCTTCATAGAGATGTGATTTCTTGGAATTCGTTGATTTCTGGTTTTTCTCAAAGTGGATATCTCGAAGCATGTCTGAAAATAATCTGTTTGATGAAATTTGAAACTATGATCAAACCAAATGATGTTACGATCATATCAGTTGTATCAGCCTGTACCGATACTAAATCTCTGGAAGCTGGGAAGTACATTCATGGATTTTCTCATAAATCCGGTTTAATCTTCTATGCTAAAGTCGCTAATTCTCTGATCAACATGTATGGGAGGTTAGATTGTTTTGATGAGGCCTGTAATCTGTTCTACGCCATGCCAGTTCCAAACATAGTATCGTGGAATTCAATCATTGCAGTTTCTACTAAATCCGGGTTGGCAGATAAGGGATTAGCTTCCTTTAATCAGATGAGGAAGGATGGAATAGAACCTGATGAAGGAACTATGCTGGTTTTATTTCAAGTCTGTGAATCTTTGGGAATTCGAAAATTAGCCGAGGGTATCCACGGTTTAATATTCTGCTATGGTTTACATGACAAGGTAGAAATTGCGACTGCTCTTCTTGATATTTATGCGAAGTTAGGGAGATTAAATGCTTCGAAAAAGGTTTTTGGAGAAATAATATATCCAGATAGAGTAGCTTGGACTGCCATGCTTGCAGGCTATGCAGTTCATGGAATTGGAAAAGAAGCAATTGAGCTTTTTGAGAGCATGGTTCTGCAAGGCCTAAAGCCTGATCATGTTGTCTTCACGCATTTATTAAATGGTTGCAGTCACTCAGGGCTGGTAAAGGAGGGGAGACAATACTTCAAGCTCATGTCTGAAGTTTATGGAGTTGCACCAAGGGTGGATCATTATTCATGCATGGTCGATCTACTAGGTCGACGAGGACTTCTTGAAGAAGCTTATGAGCTGATTAAAAGTATGCCAATGGATCCAAATTCCGCTGTATGGGGTGCCCTTCTCGGGGCTTGTAAGGTTCATAAAAATGTCGAGCTGGGTGAGAAAGTTGCCGAATATTTGTTCGACATGGATCCTTCCGATGCACGAAACTACATTATGCTATCAAATATTTACTCATCGTGTCACTTATGGAATGATGCTTCTAAAGTGAGAGCCTTGATGAAGAACCGAGGTGTTGTTAGAAACACGGGTTGCAGTTTTATCGAACATGAAAGCAAGATTTATCGTTTTGTAGTGGGCGATCAGTCTCACTTGGACACAAATAAGATTTATAGGAAGTTAGAAGAAGTGATGACAAAAATTCGGGGGGCTGGATTCGAGTTGAATACTGAATTTATCCATCAAGATGTTGATGACGAAGTGAAGGAAGATATGATCAATAAGCACAGTGAGAAGCTGGCCATTGCCTTTGGGCTTTTAGTCAGTAATGTTAAGACGCCATTGGTGATAACAAAGAATCTCAGAATATGTGGAGACTGCCATAGCACTGCAAAGGGTATTTCACTGATTGAGAAGAGAACGATCATCATTAGAGATACTAAACGGTTTCACCATTTCTCCAATGGATTGTGTTCTTGTCGAGATTATTGGTAA 1911 40.92 MLLSWRSLFRVPSINRSYFYNACRLHHIPLILGKFFASSMSRSDLLCRSPLLQTLPLTNSEALISALVAAVSSCNSVCYCRGIHARAMKSVNYRDGFIGDQLAFRYVKLGYPEDAQKLFEEILHRDVISWNSLISGFSQSGYLEACLKIICLMKFETMIKPNDVTIISVVSACTDTKSLEAGKYIHGFSHKSGLIFYAKVANSLINMYGRLDCFDEACNLFYAMPVPNIVSWNSIIAVSTKSGLADKGLASFNQMRKDGIEPDEGTMLVLFQVCESLGIRKLAEGIHGLIFCYGLHDKVEIATALLDIYAKLGRLNASKKVFGEIIYPDRVAWTAMLAGYAVHGIGKEAIELFESMVLQGLKPDHVVFTHLLNGCSHSGLVKEGRQYFKLMSEVYGVAPRVDHYSCMVDLLGRRGLLEEAYELIKSMPMDPNSAVWGALLGACKVHKNVELGEKVAEYLFDMDPSDARNYIMLSNIYSSCHLWNDASKVRALMKNRGVVRNTGCSFIEHESKIYRFVVGDQSHLDTNKIYRKLEEVMTKIRGAGFELNTEFIHQDVDDEVKEDMINKHSEKLAIAFGLLVSNVKTPLVITKNLRICGDCHSTAKGISLIEKRTIIIRDTKRFHHFSNGLCSCRDYW 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4848901 4850811 + Bpe017552.1 Bpe05g00164 103941

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00164 636 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 50 622 - -
Bpe05g00164 636 TIGRFAM PPR: pentatricopeptide repeat domain 128 154 IPR002885 -
Bpe05g00164 636 TIGRFAM PPR: pentatricopeptide repeat domain 230 264 IPR002885 -
Bpe05g00164 636 TIGRFAM PPR: pentatricopeptide repeat domain 331 364 IPR002885 -
Bpe05g00164 636 TIGRFAM PPR: pentatricopeptide repeat domain 366 393 IPR002885 -
Bpe05g00164 636 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 50 622 - -
Bpe05g00164 636 Gene3D Tetratricopeptide repeat domain 49 183 IPR011990 GO:0005515
Bpe05g00164 636 Gene3D Tetratricopeptide repeat domain 184 287 IPR011990 GO:0005515
Bpe05g00164 636 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 126 160 IPR002885 -
Bpe05g00164 636 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 329 363 IPR002885 -
Bpe05g00164 636 Pfam PPR repeat 202 224 IPR002885 -
Bpe05g00164 636 Pfam PPR repeat 128 154 IPR002885 -
Bpe05g00164 636 Pfam PPR repeat 106 125 IPR002885 -
Bpe05g00164 636 Pfam PPR repeat 403 428 IPR002885 -
Bpe05g00164 636 Pfam PPR repeat 303 325 IPR002885 -
Bpe05g00164 636 Pfam E motif 446 508 IPR046848 -
Bpe05g00164 636 Pfam DYW family of nucleic acid deaminases 544 636 IPR032867 GO:0008270
Bpe05g00164 636 Gene3D Tetratricopeptide repeat domain 299 528 IPR011990 GO:0005515
Bpe05g00164 636 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 228 262 IPR002885 -
Bpe05g00164 636 Pfam PPR repeat family 328 376 IPR002885 -
Bpe05g00164 636 Pfam PPR repeat family 227 274 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00164 - - - qsu:112017115 798.119
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g01681 Bpe05g00164 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00164 Bpe-Chr5:4848901 Bpe04g01944 Bpe-Chr4:24313499 3.28E-07 dispersed
Bpe05g00164 Bpe-Chr5:4848901 Bpe02g00048 Bpe-Chr2:355666 9.63E-33 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g147 . . . . . . . . Cmo05g00332 . . . . . . . . Bhi04g00085 . . . . . . Cla08g01392 . . . . . . . . . Cone20ag0051 . . . Cme03g01544 . . Bda08g01186 . Bpe02g01681 Bpe05g00164 . . . . . . Cma05g00329 Car05g00276 . . . . . . . . . . . . . . . . . Lsi08g01284 . Chy03g01051 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012454 1 1 0 2 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 0 2 0 0 1 1 0 0 1 24
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00164 Bpe_Chr05 FPKM 0.559282 0.0 1.896595 3.3123 10.090185 10.455708 10.697099 4.318743 5.416469 4.723571