Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00207 ATGAGTAAAGTCCACATTATAGAGCAATACCAAGCTTCTACATCAATATCGTCAACACCTACACCATGGAACACACAACATAAGCCTAACGCTCATGTAGCCGCACCAGACAACCACATCAGGGTGAGGGTGTACCTCGCCTCACACTACACCCTGACACTTCGGACGCGCATAACTTTTGCTCAGGCCAAAACAGACAAAAACAGAATCTACTCTCCCTCCAACATAACATTCAGTAACTCGAGAAAGATTCAAGAAGAAAAAGTCCAAATATTACAAATAGAAGCCAAAAAGATATTTAGAGTGCAACTTATAAGTCACACAAGTGCAAACCATGAAGAAAACATGCAGCAGCTCGCTGGTTTGCAGGGGTCAAATTCTTTTTTATGTACCAAAGGAATACAATTGCAAAATTTATGTGAACTGTTGAGACCGAGGGGCTGTTGCAAAAAAATACAACAGCTTTTAAGGAACCAAGGCCGTATGCATGGCACTGCCCATTTTCTTTGTCATTTTCATCATCGGAAAATTGAAGTTCGCAAATCCGAACGCGATCTTTATTTTCGTGAGCAAATGGCAATAGGAGATTGCAAAGAGCTCCTTGATTTCTCGGTCTCGGAACTGGCTTTGAAGCCTAAAAGTTTTGTGTCACCAGACGGGACTGGAAATTATAGTACGATTATGGAAGCCGTTAATATGGCACCGAACTACAGTCAAAGAAGGTTTATTATATATGTGAAAACTGGTGTTTACAGGGAGAATGTTGATCTGAAGAAGAAGAAAACTAACATAATGTTTGTAGGAGATGGAATAGGACAAACTATTGTGACAGGTGATAGAAATTTCATGCAGGGGTGGACTACATTCAGAACTGCAACAGTTGCGGTTTCTGGGAAGGGATTCATAGCAAGAGACATGACATTTCGGAACACAGCGGGGCCGGAAAACTTCCAAGCGGTGGCGCTCAGAGTAGACTCCGACCAATCAGCGTTCTTCAGATGCAGCATCGAAGGCCACCAAGACTCTCTCTACATCCACTCTCTCCGCCAATTCTACCGCGAGTGCTCCATCTCGGGCACCATCGACTACATCTTTGGCAACGGCGCTGCCGTTCTTCAAAACTGCAAAATCTTCACGGGAGTCCCTCTTCCGCTTCAGAAGGTTACGATCACAGCTCAGGGTCGGAAAAACCCCCATCAGAGCACCGGCTTCACGATCCAAAACAGCTTCATCTACGCCTCCCAGCCGACGTACCTGGGTCGGCCGTGGAAGCAGTACTCGAGAACAGTCTTTCTCAACACCTACATGAATGAGTTGGTGCAACCCAGGGGGTGGCTCGAATGGTGGGGGGACTTTGCGCTGGGGACCCTCTGGTATGGGGAGTACAAGAACTATGGGGCCGGAGCAGAGCTGTCCGGGAGGGTGAAATGGCCGGGTTATCATGTGATTAGGGACCCTTCGCTAGCTTCTTTCTTCACTGTTGGGAGGTTCATTGATGGACGTTCATGGCTGCCTGCAACTGGCGTTAGGTTTCATGATGGTCTGAGGGCTTAA 1554 46.72 MSKVHIIEQYQASTSISSTPTPWNTQHKPNAHVAAPDNHIRVRVYLASHYTLTLRTRITFAQAKTDKNRIYSPSNITFSNSRKIQEEKVQILQIEAKKIFRVQLISHTSANHEENMQQLAGLQGSNSFLCTKGIQLQNLCELLRPRGCCKKIQQLLRNQGRMHGTAHFLCHFHHRKIEVRKSERDLYFREQMAIGDCKELLDFSVSELALKPKSFVSPDGTGNYSTIMEAVNMAPNYSQRRFIIYVKTGVYRENVDLKKKKTNIMFVGDGIGQTIVTGDRNFMQGWTTFRTATVAVSGKGFIARDMTFRNTAGPENFQAVALRVDSDQSAFFRCSIEGHQDSLYIHSLRQFYRECSISGTIDYIFGNGAAVLQNCKIFTGVPLPLQKVTITAQGRKNPHQSTGFTIQNSFIYASQPTYLGRPWKQYSRTVFLNTYMNELVQPRGWLEWWGDFALGTLWYGEYKNYGAGAELSGRVKWPGYHVIRDPSLASFFTVGRFIDGRSWLPATGVRFHDGLRA 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 13335516 13343466 + Bpe025798 Bpe05g00207 103984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00207 517 ProSitePatterns Pectinesterase signature 2. 357 366 IPR033131 -
Bpe05g00207 517 Gene3D - 208 515 IPR012334 -
Bpe05g00207 517 PANTHER PECTINESTERASE 214 514 - -
Bpe05g00207 517 ProSitePatterns Pectinesterase signature 1. 238 257 IPR018040 -
Bpe05g00207 517 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 22-RELATED 214 514 - -
Bpe05g00207 517 Pfam Pectinesterase 215 500 IPR000070 GO:0030599|GO:0042545
Bpe05g00207 517 SUPERFAMILY Pectin lyase-like 212 513 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00207 Bpe-Chr5:13335516 Bpe14g00892 Bpe-Chr14:6662463 2.74E-118 dispersed
Bpe05g00207 Bpe-Chr5:13335516 Bpe08g00556 Bpe-Chr8:3879095 1.78E-123 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00207 K01051 - mnt:21411085 548.125