Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00295 ATGGACTTTGATGAATATGAATATCTTGAGAAAATGGTTGATTACACTGAGCCCCCAAAAGTGAAGGACGCTGCCGGTGGGGGAGATGAAACTGTTAAGTTTGGAGAGAAAAACCGCAGTCGAAGTTCAAAGCATAAGATTGATGACAGAGACCGTGTTGAGCATCGATCCAAGTCTTCAAAATCTGAGGGCGAGTTGCGTGGTCATGATCGGAGTCGAGAAAGGAGATCATTGAGACACCGTTCCCCTTCAGGAGACAAAGATAAAGATAGACACAAGAGTAGCCGAGATCATAGGGACAAGGAGGAGAGAGATCGGGATAAGGAGAGGAATGGAAAAGAGAGAGATAGGGATAAGGACCGAGAGCGAGATCGGGATCGGGATCGGGATCATGACCGAGATAGAGGAAAGAGAGAGTTTGAAAATGAGAATCAGAGGCAAAAAGAGAGAGAGAGATCACATCAAAGCAGGAGCCAATCAGAGAAGCATCAAAGTGATCGGGATGAGAAGGATAGAGAGAAGAGTCAGGATAAAGAGAGTAAAGAAAGGGAAAAGGAAAGGGAACCAAAAGAGAGATTTAGAGAAAACAGACGACACAGAGAAAAAAAGGAAGATGCAACAGAACCTGAAGCAGATCCCGAACGAGATCAAAGGACAGTGTTTGCCTACCAGATCTGTTTGAAGGCAAATGAAAGAGATGTTTACGATTTCTTCTCAAGAGCTGGCAAGGTTCGAGATGTACGCCTCATAATGGATCGTAATTCAAGGCGTTCTAAGGGATTCGGGTATATAGAGTTCTATGATGCAATGTCAGTCCCTATGGCAATAGCACTTTCTGGTCAGATACTACTTAGTCAACCTGTGATGGTGAAGCCATCTGAAGCTGAAAAGAACCAGGCTCACTCAGCATCGGCAACTGGTGGATCAGGTGGGCTTATAGGTCCCTATTCAGGTGGAGCCAGAAGGTTGTATGTCGGAAATCTGCATACTAGTATAACCGAAGATAACCTTCGTCAGGTCTTTGGAGCATTTGGTTCCGTGGAGCTTGTGCAGTTGCCTGTTGATGAAACTGGGCATTGCAAAGGGTTCGGTTTTGTTCAGTTTGCGCGCCTGGAAGATGCTAGAAATGCATTGAGTTTGAATGGTCAATTAGATATTGCTGGTCGAACAATAAAGGTGTCGGCTGTTACTGATCAAGTGGGATCACAGGATCTTGAAAAAAATACCGGTGATTTTGATGATGATGAAGGTGGAAACTTGTCATTAGATGCACGGTCACGGGCACTTTTAATGCAGAAGTTGGATCGAAGTGGCACTGCTTCTAGCATTACTGGTTCAATCCCTGTTGGTAATAGCAATGCTCTCTCTCTTCCAATATCACCCATTGTAGGAACGGCACCAATGATTTCTTCTCTTGCTTCTCTTCCTGCTCTCACTGGACTTAGTGGTGCTGATTTTCAATTTCCTGCTACAACAATTCCTTCAATTGATACAATCGGAGTTCCAAGCAATTGTTTATTACTAAAGAATATGTTTGATTCGTCAGTTGAGATAGAGCCAGATTTTGATATGGATATTAAAGATGACGTTCAAGATGAATGTTCCAAGTTCGGAAACATAAAACACATCCACGTGGACAAGAATACTGCTGGTTTTGTCTACTTGAAATTTGAGCACACACAATCGGCAATTGATGCACAACGAAGTCTCCATGGAAGATGGTTTGCTGGGAAGATGATCACCGCAACTTTCATGGTTCCTCAGTCGTACGATTCGAAATTCCCCGAAAGAAAGTAA 1797 43.57 MDFDEYEYLEKMVDYTEPPKVKDAAGGGDETVKFGEKNRSRSSKHKIDDRDRVEHRSKSSKSEGELRGHDRSRERRSLRHRSPSGDKDKDRHKSSRDHRDKEERDRDKERNGKERDRDKDRERDRDRDRDHDRDRGKREFENENQRQKERERSHQSRSQSEKHQSDRDEKDREKSQDKESKEREKEREPKERFRENRRHREKKEDATEPEADPERDQRTVFAYQICLKANERDVYDFFSRAGKVRDVRLIMDRNSRRSKGFGYIEFYDAMSVPMAIALSGQILLSQPVMVKPSEAEKNQAHSASATGGSGGLIGPYSGGARRLYVGNLHTSITEDNLRQVFGAFGSVELVQLPVDETGHCKGFGFVQFARLEDARNALSLNGQLDIAGRTIKVSAVTDQVGSQDLEKNTGDFDDDEGGNLSLDARSRALLMQKLDRSGTASSITGSIPVGNSNALSLPISPIVGTAPMISSLASLPALTGLSGADFQFPATTIPSIDTIGVPSNCLLLKNMFDSSVEIEPDFDMDIKDDVQDECSKFGNIKHIHVDKNTAGFVYLKFEHTQSAIDAQRSLHGRWFAGKMITATFMVPQSYDSKFPERK 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 16216596 16240483 - Bpe017709.1 Bpe05g00295 104072

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00295 598 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 595 - -
Bpe05g00295 598 TIGRFAM SF-CC1: splicing factor, CC1-like family 103 595 IPR006509 GO:0003723|GO:0005634|GO:0006397
Bpe05g00295 598 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 321 398 IPR000504 GO:0003723
Bpe05g00295 598 SMART rrm2_1 505 583 IPR003954 GO:0003676
Bpe05g00295 598 SMART rrm2_1 322 394 IPR003954 GO:0003676
Bpe05g00295 598 CDD RRM3_RBM39_like 503 585 - -
Bpe05g00295 598 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 229 286 IPR000504 GO:0003723
Bpe05g00295 598 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 323 392 IPR000504 GO:0003723
Bpe05g00295 598 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 528 580 IPR000504 GO:0003723
Bpe05g00295 598 Gene3D - 311 404 IPR012677 -
Bpe05g00295 598 Gene3D - 147 306 IPR012677 -
Bpe05g00295 598 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 218 295 IPR000504 GO:0003723
Bpe05g00295 598 SUPERFAMILY RNA-binding domain, RBD 319 400 IPR035979 GO:0003676
Bpe05g00295 598 PANTHER CC1-LIKE SPLICING FACTOR 1 595 - -
Bpe05g00295 598 SMART rrm1_1 219 291 IPR000504 GO:0003723
Bpe05g00295 598 SMART rrm1_1 505 583 IPR000504 GO:0003723
Bpe05g00295 598 SMART rrm1_1 322 394 IPR000504 GO:0003723
Bpe05g00295 598 Gene3D - 499 598 IPR012677 -
Bpe05g00295 598 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 509 587 IPR000504 GO:0003723
Bpe05g00295 598 SUPERFAMILY RNA-binding domain, RBD 211 319 IPR035979 GO:0003676
Bpe05g00295 598 CDD RRM1_RBM39_like 219 291 - -
Bpe05g00295 598 MobiDBLite consensus disorder prediction 13 216 - -
Bpe05g00295 598 SUPERFAMILY RNA-binding domain, RBD 501 584 IPR035979 GO:0003676
Bpe05g00295 598 Coils Coil 137 157 - -
Bpe05g00295 598 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 412 522 IPR029123 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00295 K13091 RBM23_39; RNA-binding protein 23/39 - mnt:21391727 708.368
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00997 Bpe-Chr2:9889812 Bpe05g00295 Bpe-Chr5:16216596 3.20E-09 dispersed
Bpe03g00515 Bpe-Chr3:25136227 Bpe05g00295 Bpe-Chr5:16216596 5.48E-07 dispersed
Bpe05g00295 Bpe-Chr5:16216596 Bpe13g00008 Bpe-Chr13:198732 7.96E-150 dispersed
Bpe10g00061 Bpe-Chr10:881419 Bpe05g00295 Bpe-Chr5:16216596 1.02E-08 dispersed
Bpe11g00113 Bpe-Chr11:767727 Bpe05g00295 Bpe-Chr5:16216596 5.73E-07 dispersed
Bpe11g01711 Bpe-Chr11:13411875 Bpe05g00295 Bpe-Chr5:16216596 4.91E-06 dispersed
Bpe14g00854 Bpe-Chr14:6383172 Bpe05g00295 Bpe-Chr5:16216596 4.05E-08 dispersed
Bpe05g00295 Bpe-Chr5:16216596 Bpe12g00052 Bpe-Chr12:406231 1.04E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g184 . . . . . . . . Cmo19g00761 . . . . . . . Cpe15g00604 Bhi05g01690 . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe05g00295 . . . . . . . . . . . . . . . . . . . . . . . . . Lsi11g01213 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002135 1 5 1 2 2 2 3 2 2 2 2 2 2 2 2 3 2 4 3 2 2 2 2 1 2 1 2 3 2 2 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00295 Bpe_Chr05 FPKM 15.669114 16.514893 20.898106 17.940311 20.486538 23.295254 22.152908 32.412468 31.006348 30.750168