Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00312 ATGTCTTCCACCTTCAGCGGCGATGAAACTGCTCCCTTTTTCGGCTTTCTAGGCGCCGCTGCTGCCCTTGTTTTCTCCTGTATGGGAGCTGCGTATGGTACAGCAAAAAGTGGTGTTGGTGTGGCTTCAATGGGAGTTATGAGACCCGAGCTGGTGATGAAATCTATTGTTCCAGTAGTTATGGCTGGAGTTTTGGGTATCTATGGCTTGATTATTGCTGTCATTATTAGCACAGGGATCAATCCCAAGGCCAAATCATATTACCTATTTGATGGTTATGCTCATTTGTCATCTGGTCTTGCTTGTGGCCTTGCTGGGCTGTCTGCCGGAATGGCAATTGGTATTGTTGGTGATGCTGGTGTCAGGGCCAATGCACAGCAGCCAAAACTTTTTGTGGGGATGATTTTGATTCTCATTTTCGCAGAGGCTCTGGCTCTCTATGGGCTCATTGTTGGGATCATCTTATCTTCCCGAGCTGGCCAATCCAGAGCAGAGTAG 498 47.79 MSSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 16688258 16695079 - Bpe017726.1 Bpe05g00312 104089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00312 165 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 165 - -
Bpe05g00312 165 SUPERFAMILY F1F0 ATP synthase subunit C 13 77 IPR035921 -
Bpe05g00312 165 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 165 - -
Bpe05g00312 165 SUPERFAMILY F1F0 ATP synthase subunit C 87 156 IPR035921 -
Bpe05g00312 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 30 54 IPR000245 GO:0033179|GO:0046961|GO:1902600
Bpe05g00312 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 56 80 IPR000245 GO:0033179|GO:0046961|GO:1902600
Bpe05g00312 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 107 133 IPR000245 GO:0033179|GO:0046961|GO:1902600
Bpe05g00312 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 134 157 IPR000245 GO:0033179|GO:0046961|GO:1902600
Bpe05g00312 165 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 13 121 IPR011555 GO:0033179|GO:0046961|GO:1902600
Bpe05g00312 165 CDD ATP-synt_Vo_c_ATP6C_rpt2 89 156 - -
Bpe05g00312 165 CDD ATP-synt_Vo_c_ATP6C_rpt1 13 80 - -
Bpe05g00312 165 Gene3D - 11 162 IPR035921 -
Bpe05g00312 165 Pfam ATP synthase subunit C 97 155 IPR002379 GO:0015078|GO:0033177|GO:1902600
Bpe05g00312 165 Pfam ATP synthase subunit C 17 76 IPR002379 GO:0015078|GO:0033177|GO:1902600
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01721 Bpe-Chr2:19682385 Bpe05g00312 Bpe-Chr5:16688258 2.94E-112 dispersed
Bpe04g00047 Bpe-Chr4:432678 Bpe05g00312 Bpe-Chr5:16688258 3.68E-23 dispersed
Bpe02g00364 Bpe-Chr2:2386718 Bpe05g00312 Bpe-Chr5:16688258 2.07E-08 wgd
Bpe05g00130 Bpe-Chr5:2941980 Bpe05g00312 Bpe-Chr5:16688258 4.75E-113 wgd
Bpe05g00312 Bpe-Chr5:16688258 Bpe07g00494 Bpe-Chr7:9605676 3.31E-112 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00312 K02155 - cit:102607521 288.5