Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00321 ATGGAGGCAATCAGAAAGCAAGCAACCAAGTTGCGGGAACAGGTCGCTAGGCAACAACAGGCTGTCCTCAAGCAGTTTGGAGGTGGCGGCTATGGGGGTTCTGATAATGTCATAACAGACGAGGCAGAACTCCAGCAACATCAGAAACTCGAGAGGCTTTATATATCAACTCGTGCTGGCAAGCATTTTCAAAGGGATATTGTCCGTGGAGTTGAGGGTTACATTGTTACCGGTTCTAAACAAGTTGAAATTGGCAAGTTCATATGGACAAAGTTGTCTGAGGATAGTAGGAAATATGGTTCTGAAAATACATGCACTAGTGGCAACACATTAACTAGAGCTGCATCAAATTATGGACGTGCCCGAGCTCAAATGGAAAAGGAACGGGGGAATATGTTAAAAGCTCTTGGAACACAGGTGGCAGAGCCGCTACGAGCAATGGTAATGGGAGCTCCGTTGGAAGATGCGAGGCATCTTGCTCAACGTTATGATAGAATGCGACAAGAAGCCGAAGCTCATGTACTATTTAATAATGATTTTAAAAATAGACAATGTTTACAGGCTATTGAAGTTTTCAAGCGGCTAGCAAAAGTCAGAGAAACGCCTGGAAACGCTGAGAATGCTATGAAACTTGAAGCTGCTGAAGCAAAACTGCAAGAACTTAAGTCCAATATGGCCATTTTGGGAAAAGAAGCTTCAGCTGCGATGGTTGCTGTTGAAGCTCAACAACAGAGGTTAACTCTCCAAAGACTAATTGCAATGGTAGAAGCAGAACGTACATATCATCAAAAAGTTCTTCAGATACTTGATCAACTTGAGGGTGAGATGATATCAGAGCGGCAACGAATTGAAGCACCGCCTACTCCAATAGTTGATAATACAAGTACTATTCTTCCACCGTCATATGAAGAGGCTAATGGTGTGTATGCTTCTGAAGTAACTAATGGATTGACAGATGCCATGGGTTACTTCTTAGGGGAGGTTTGTGTGATTACTTTGAGATTTAAATTTCCATTATTTTCTGTCCTACTTTTGTTTATATTTTCAATTCCACTACAGGTTATGCATCAATATCAAGCGGAATCTGATGTGGAGCTAAGTTTGTCAATTGGTGACTACGTTGTTGTTCGAAAGGTTACTAATGGCGGTTGGGCCGAGGGTGAATGCAAAGGAAAAGCAGGTTGGTTCCCATTTGGATATATTGAAAGAAGGGATCGAGTTTTAGCTAGCAAGGTAGCTGAGGTGTTCTAA 1251 42.21 MEAIRKQATKLREQVARQQQAVLKQFGGGGYGGSDNVITDEAELQQHQKLERLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGKFIWTKLSEDSRKYGSENTCTSGNTLTRAASNYGRARAQMEKERGNMLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQEAEAHVLFNNDFKNRQCLQAIEVFKRLAKVRETPGNAENAMKLEAAEAKLQELKSNMAILGKEASAAMVAVEAQQQRLTLQRLIAMVEAERTYHQKVLQILDQLEGEMISERQRIEAPPTPIVDNTSTILPPSYEEANGVYASEVTNGLTDAMGYFLGEVCVITLRFKFPLFSVLLLFIFSIPLQVMHQYQAESDVELSLSIGDYVVVRKVTNGGWAEGECKGKAGWFPFGYIERRDRVLASKVAEVF 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 16834991 16845263 + Bpe017735.1 Bpe05g00321 104098

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00321 416 Coils Coil 238 258 - -
Bpe05g00321 416 Coils Coil 1 21 - -
Bpe05g00321 416 PRINTS Neutrophil cytosol factor 2 signature 372 388 - -
Bpe05g00321 416 PRINTS Neutrophil cytosol factor 2 signature 388 401 - -
Bpe05g00321 416 PRINTS Neutrophil cytosol factor 2 signature 352 372 - -
Bpe05g00321 416 PANTHER SH3 DOMAIN-CONTAINING 1 416 - -
Bpe05g00321 416 SMART SH3_2 350 405 IPR001452 GO:0005515
Bpe05g00321 416 Gene3D Arfaptin homology (AH) domain/BAR domain 47 287 IPR027267 -
Bpe05g00321 416 PANTHER SH3 DOMAIN-CONTAINING PROTEIN 2 1 416 - -
Bpe05g00321 416 Gene3D SH3 Domains 345 414 - -
Bpe05g00321 416 SUPERFAMILY BAR/IMD domain-like 47 276 IPR027267 -
Bpe05g00321 416 SUPERFAMILY SH3-domain 345 407 IPR036028 GO:0005515
Bpe05g00321 416 Pfam Variant SH3 domain 354 402 IPR001452 GO:0005515
Bpe05g00321 416 ProSiteProfiles Src homology 3 (SH3) domain profile. 347 406 IPR001452 GO:0005515
Bpe05g00321 416 Coils Coil 153 173 - -
Bpe05g00321 416 Coils Coil 204 231 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00321 - - - jre:109006528 616.69
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00321 Bpe-Chr5:16834991 Bpe11g01112 Bpe-Chr11:8317123 8.99E-116 dispersed
Bpe05g00321 Bpe-Chr5:16834991 Bpe07g00444 Bpe-Chr7:5860265 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g26 . Blo15g00668 Bda06g00963 Bda08g00957 . . Bma05g00428 . . . Cma02g00365 . Car02g00233 . . . . . . . . . . . . . . . . . . . . . Cone10ag1099 Lsi10g00414 . Chy11g00338 . . . . . . Bpe05g00321 . . Sed01g0261 Cmo02g00369 . . . . . . Cpe05g01290 Bhi10g01943 Tan05g1240 Cmetu11g1701 . Hepe08g0977 . . . . . . . . . . Csa02g01306 . Cme11g00167
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007122 2 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00321 Bpe_Chr05 FPKM 0.506667 0.500239 0.896958 0.0 0.534588 0.37709 0.0 0.0 0.0 0.0