Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00327 ATGAATGAGCGCGGCGAAGAGGGAGCCGCTACTAAGCACTCCGCCTCAACTGTGTTTGTTTCAAACTTACCATACTCCTTTACCAACAAACTGCTTGAAGAAACATTTGAAGATGTCGGACCTGTTAGACGGGCTTTCATGGTTACAGAAAAGGGTATGTACAGAATCATGCTTGCTATCAAAGAAGATGCAAATCGTGCTATAGAGTTGAAAAATGGGTCATCTGTTGAAAGCCGCAAAATTGCAGTCAAACATGCAATGCAGCGTGCTCCTCTTGAGCAGCGAAGATCGAAGGAGAAACAAGTCATTCCGTTGAAGGCGAATAATGAAAAGGATGGTGAAACCTCCAAGTCAGGAAAGGATGCTTCAAATTTGGTAGAACAAGTTAAACTTGGGAAGAGTACAAAGGCATCTCCAGTTTCTCGTGATTTAGCAATTAAAGCAGGTTCTTCAGAGAAGCAAAGGGTTGCAAGGACTGTTGTATTTGGAGGTCTAATTAATGCTAAAATGGCTGAAGATGTTCATTGCCGAGCTCGAGACATAGGTCCTGTTTGTTTAGTGACTTATCCATTGCCAAAAGAAGAAATTCAATCACATGGTTTGTTACGAGATGGATGCAAAATGGATGCTTCAGCCGTGCTCTATGATAGTGTAAAGTCTGCCCGTGCTGCTATAGCAATGTTACATCAGAAAGAAATTGAAGGACGTACCATATGGGCCCGCCAACTGGGGGGTGAGGGTTCCAAAACTCAGAAATGGAAAATTATTGTCAGAAACCTTCCTTTCAAGGTTTTTACCTACTCATATAGTCTTTTAGTGCTCTGCTTTATTCTGACAAGCTTCACTAAGCAATTTACGTTGACACAGGCCACAGAAAATGAAATAAAGAACACGTTTTCATCTGCTGGGTTTGTCTGGGACGTGTTCATTCCAAATAAATCTGACTCGGGATTGTCAAAGGGTTTTGCATTTGTGAAATTTACATGCAAACAAGATGTGGAGAATGCTATTCAACTGTTCAATGGTCAAACCTTTGGTAAAAGACCTATAGCTGTTGATTGGGCCGTTCCAAAGAAAATGTACAGTAATGGTGCCAATGCTACTCCGTTAGAAGATGAGGAATTAAATGAAAGCAACAGAGATGGCGTCAGTAGTGATGAGGATTTGGAAGATGATCTGGAGGATTCTCAACAAAGCCCCCAGCATGCTGGAGTTAATTGTCTTCGTGATGATCCAATATCAACGGAGAAAGACATCACTGTTAAAGAACATAATTTTGAAGAGGAAACAGACATGGCAAGAAAAGTTCTTAAGAACTTCATCTCACGATCAGCTGAAGAAACTATTCCTTCTGCCAGTTATGACAAGGATCCAAATTCTGGTGAAGGTAGTGGCGATTTACCTTCCAATTCATCTGTTGTGCCTGCCAAAGTAGCAGCAGCAACCAACCCAAAAAAAGTAAATGAAAGTAAGTTGTTAGATCTTAAAGTGGTGGATGATGATTTACAGAGAACAACTTTCATAAGCAACCTTCCTTTTGAGGTCGAGAATGAAGAAGTGAAACTAAGATTTTCTGGATTTGGTGAAGTTCTTTCGTTTGTCCCAGTTGTTCATCAAGTGACCAAGCGACCCAGAGGTACTGGTTTTCTCAAGTTTAAAACCATAGATGCTGCTAATGCCGCTGTTGCAGCGGCAAAATCTGAGTCTGGGTTGGGAATTTTTCTGAAAGGGAGACAATTGACAGTATTGAAGGCTCTGGATAAGAAATCGGCACATGACAAGGAATTGGAGAAGTCCAAGAATGACAATCACGACCAGCGCAATATTTACTTGGCCAAGGAAGGCCTAATTATTGCCGGAACCCCAGCTGCTGAAGGTGTTTCAGCTAGTGACATGATGAAACGTGAAAGGTTAGAGAAGAAAAAGGCGACTAAACTTGAATCTCCAAATTTTCATGTTTCAAGGACTAGACTCGTCATATACAATTTACCTGTATCAATGAATGAAAAGAAACTAAAGGAGCTTTGTATTAAAGCAGTTCTTTCACGAGCTTCCAAGCAAAAGCCTGTGATTCGGCAGATAAAGTACGTAAAGGACACTAGGAAAGGAAATGCAGTCAAGAAAACCCAGAATCTTGGAGTTGCTTTTGTCGAGTTTTCTGAGCATCAGCATGCACTAGTGGCCTTGAGAGTTCTCAACAACAATCCGGAAACATTTGGACCTGCAAATCGTCCAATTGTTGAGTTTGCTGTTGATAATGTGCAAATGTTGAAGCTACGAAAAGCCAAACTACAAGTTCAGTCGCAGGGTCCCCGTAGAGACCAAAAAAATGGCGATAAAAGAGATGCTCCTGATGTCCCTTTGCATGCGAAAGAGAAACCCAAGAAGTGGAAATCAGTAGACAATGATAGGTTAAGTAAAAATCAAGTTTTGCATGAAGGTGAACAAGAACCAAGATTACCTAATGAAGCTGCTACAGAAGGAGGCATTAGCACAAAGAAACGGAAAGCCAAACTAGAGAGCGGAAAGCTGGCGGAGTTGTCTCGGAAAACCAAGTCAAGACACAGAAAACAAAAGACAGAAAGTTGGAGGCAAAGAAATGCTGGATCGGATGAAGTGGCAGCTGCTGAGACTCGTAAACCAGGATCTTTGGAGGAAAGAGATGTACAACACAAAAAGAGGAAGATGCATGAGGAAGTCAGACAAAGTAATGGAGAAGAAAATTTGAAGACCCGAAAAAGACCAAAGAAGAACAAGGAACCCGTAGGGAGAGATGTTGCAGATAGACTGGACATGCTCATTGAACAATACAAATCCAAGTTCTCACAGCCGAGTTCCCGTGCAATTGGTGGTGATAGGAAAGATTCTGGACAAGTGAGAAAATGGTTCCAATCTTAA 2898 41.55 MNERGEEGAATKHSASTVFVSNLPYSFTNKLLEETFEDVGPVRRAFMVTEKGMYRIMLAIKEDANRAIELKNGSSVESRKIAVKHAMQRAPLEQRRSKEKQVIPLKANNEKDGETSKSGKDASNLVEQVKLGKSTKASPVSRDLAIKAGSSEKQRVARTVVFGGLINAKMAEDVHCRARDIGPVCLVTYPLPKEEIQSHGLLRDGCKMDASAVLYDSVKSARAAIAMLHQKEIEGRTIWARQLGGEGSKTQKWKIIVRNLPFKVFTYSYSLLVLCFILTSFTKQFTLTQATENEIKNTFSSAGFVWDVFIPNKSDSGLSKGFAFVKFTCKQDVENAIQLFNGQTFGKRPIAVDWAVPKKMYSNGANATPLEDEELNESNRDGVSSDEDLEDDLEDSQQSPQHAGVNCLRDDPISTEKDITVKEHNFEEETDMARKVLKNFISRSAEETIPSASYDKDPNSGEGSGDLPSNSSVVPAKVAAATNPKKVNESKLLDLKVVDDDLQRTTFISNLPFEVENEEVKLRFSGFGEVLSFVPVVHQVTKRPRGTGFLKFKTIDAANAAVAAAKSESGLGIFLKGRQLTVLKALDKKSAHDKELEKSKNDNHDQRNIYLAKEGLIIAGTPAAEGVSASDMMKRERLEKKKATKLESPNFHVSRTRLVIYNLPVSMNEKKLKELCIKAVLSRASKQKPVIRQIKYVKDTRKGNAVKKTQNLGVAFVEFSEHQHALVALRVLNNNPETFGPANRPIVEFAVDNVQMLKLRKAKLQVQSQGPRRDQKNGDKRDAPDVPLHAKEKPKKWKSVDNDRLSKNQVLHEGEQEPRLPNEAATEGGISTKKRKAKLESGKLAELSRKTKSRHRKQKTESWRQRNAGSDEVAAAETRKPGSLEERDVQHKKRKMHEEVRQSNGEENLKTRKRPKKNKEPVGRDVADRLDMLIEQYKSKFSQPSSRAIGGDRKDSGQVRKWFQS 965
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 17025906 17033077 - Bpe017742.1 Bpe05g00327 104104

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00327 965 MobiDBLite consensus disorder prediction 86 118 - -
Bpe05g00327 965 SUPERFAMILY RNA-binding domain, RBD 16 238 IPR035979 GO:0003676
Bpe05g00327 965 MobiDBLite consensus disorder prediction 86 123 - -
Bpe05g00327 965 PANTHER RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED 10 395 - -
Bpe05g00327 965 SUPERFAMILY RNA-binding domain, RBD 290 361 IPR035979 GO:0003676
Bpe05g00327 965 MobiDBLite consensus disorder prediction 773 820 - -
Bpe05g00327 965 CDD RRM4_RBM28_like 656 753 - -
Bpe05g00327 965 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 504 587 IPR000504 GO:0003723
Bpe05g00327 965 MobiDBLite consensus disorder prediction 762 965 - -
Bpe05g00327 965 Gene3D - 245 386 IPR012677 -
Bpe05g00327 965 MobiDBLite consensus disorder prediction 448 472 - -
Bpe05g00327 965 Gene3D - 497 595 IPR012677 -
Bpe05g00327 965 MobiDBLite consensus disorder prediction 829 848 - -
Bpe05g00327 965 PANTHER RNA BINDING PROTEIN 502 768 - -
Bpe05g00327 965 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 88 IPR000504 GO:0003723
Bpe05g00327 965 PANTHER RNA BINDING PROTEIN 10 395 - -
Bpe05g00327 965 MobiDBLite consensus disorder prediction 878 935 - -
Bpe05g00327 965 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 290 350 IPR000504 GO:0003723
Bpe05g00327 965 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 81 IPR000504 GO:0003723
Bpe05g00327 965 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 507 565 IPR000504 GO:0003723
Bpe05g00327 965 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 656 746 IPR000504 GO:0003723
Bpe05g00327 965 Gene3D - 1 102 IPR012677 -
Bpe05g00327 965 SMART rrm1_1 17 84 IPR000504 GO:0003723
Bpe05g00327 965 SMART rrm1_1 505 583 IPR000504 GO:0003723
Bpe05g00327 965 SMART rrm1_1 657 749 IPR000504 GO:0003723
Bpe05g00327 965 SMART rrm1_1 254 353 IPR000504 GO:0003723
Bpe05g00327 965 MobiDBLite consensus disorder prediction 365 411 - -
Bpe05g00327 965 PANTHER RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED 502 768 - -
Bpe05g00327 965 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 253 357 IPR000504 GO:0003723
Bpe05g00327 965 Gene3D - 655 750 IPR012677 -
Bpe05g00327 965 SUPERFAMILY RNA-binding domain, RBD 504 734 IPR035979 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00327 K14573 NOP4, RBM28; nucleolar protein 4 - zju:107426710 985.326
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00327 Bpe-Chr5:17025906 Bpe04g01661 Bpe-Chr4:22697505 6.23E-07 dispersed
Bpe05g00327 Bpe-Chr5:17025906 Bpe06g00809 Bpe-Chr6:18256274 4.70E-08 transposed
Bpe05g00327 Bpe-Chr5:17025906 Bpe10g00710 Bpe-Chr10:13501555 4.64E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g6 . . . Bda08g00947 . . Bma05g00433 . . . . . . . . . Cpe15g00552 . . . . . . . . . . . . . . . . Cone3ag1223 Cone10ag1108 . Csa07g00016 . Cme01g01366 . . . . . Bpe05g00327 . . . . . . . . Car19g00524 . . . . . . . . . . . . . . . . Lsi11g01124 . Chy01g00761 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009278 1 1 1 3 1 1 1 1 1 1 1 1 0 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00327 Bpe_Chr05 FPKM 7.863553 9.950224 16.321114 16.874508 4.041358 4.113324 5.930419 0.511985 0.816234 0.250296