Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00361 ATGCAGGACACTGTCACCTTCCGCAAGAAATCTCCACTGTTTCTGAGGATGATTGTCTTGACGTTCTCATTGGTCTGTGGTGTTTATATCTGGTCAGTTTGTCTTAAACAAATCAGGACTAGTTCCATGGCCGGGTTTTTGAATGTTCAGGTCATTCAAATTCCATGTACAAAACCACAAATAGAACCATCTGAAGTTCCTTATGTGCATTTTCCAAAACCCCATACATATAACAGGGCCGAATGTGCGTGCAACCCAGTTAGAAATTTTGCAATTTTGTCAATGCAGAGATCTGGGAGTGGATGGTTTGAGACATTATTGAATAATCATACTAATATAAGTTCAAACGGAGAGATATTCTCTGTTAAAGTGAGGAGAAGTAACGTTTCAACTATTGTTGAAACGTTGGATAAGATTTACAATCTAGACTGGTTCAGTAGTGCTTCAAAAAACGAGTGCACGGCTGCAGTAGGCTTAAAGTGGATGCTTAATCAGGGTCTAATGCAAAACCATGAAGAAATAGCCAAGTACTTCAGAAAACGAGGTGTATCAGTCATTTTCCTCTTTCGAAGAAATCTCCTTCGCAAAATGGTCTCGGTACTCGCAAATTCTTACGATCGTGACAATAAGCCGTTAAATGGAACTCACAAGTCTCACGTACATTCAGCCCATGAGGCTGCAGTACTTGCAAAATACAAGCCGAAAATAAATGCCACATTGTTGGTTTCGGACTTGAAACAGCTAGAGGAGACGACCATTAAAGCCTTGGAGTATTTCAAGAGCACCCGTCACATAATTTTATACTACGAGGATATTTTCACAAACCGGAATAAAATAATGAAAGTACAAGACTTTCTCAAGGTTCCGAGACGGGATTTGAAGAGTCAGCAAGTGAAGATTCACAAGGGATCTCTGTCAAAACAGGTCGATAATTGGGAAGACGTGAAGAAGGCACTACAAGGGACGCCATACCAAAGCTTTCTGCATGAAGATTACAGGAAGTAA 1005 40.4 MQDTVTFRKKSPLFLRMIVLTFSLVCGVYIWSVCLKQIRTSSMAGFLNVQVIQIPCTKPQIEPSEVPYVHFPKPHTYNRAECACNPVRNFAILSMQRSGSGWFETLLNNHTNISSNGEIFSVKVRRSNVSTIVETLDKIYNLDWFSSASKNECTAAVGLKWMLNQGLMQNHEEIAKYFRKRGVSVIFLFRRNLLRKMVSVLANSYDRDNKPLNGTHKSHVHSAHEAAVLAKYKPKINATLLVSDLKQLEETTIKALEYFKSTRHIILYYEDIFTNRNKIMKVQDFLKVPRRDLKSQQVKIHKGSLSKQVDNWEDVKKALQGTPYQSFLHEDYRK 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 17645845 17648851 - Bpe017775.1 Bpe05g00361 104138

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00361 334 Gene3D - 87 317 IPR027417 -
Bpe05g00361 334 PANTHER PROTEIN, PUTATIVE, EXPRESSED-RELATED 8 332 - -
Bpe05g00361 334 Pfam Sulfotransferase domain 91 291 IPR000863 GO:0008146
Bpe05g00361 334 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 84 297 IPR027417 -
Bpe05g00361 334 PANTHER PROTEIN, PUTATIVE, EXPRESSED-RELATED 8 332 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00361 - - - mnt:21410174 537.339
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00361 Bpe-Chr5:17645845 Bpe15g00342 Bpe-Chr15:14930048 1.88E-130 dispersed
Bpe12g00059 Bpe-Chr12:442152 Bpe05g00361 Bpe-Chr5:17645845 2.82E-171 wgd
Bpe05g00361 Bpe-Chr5:17645845 Bpe07g00394 Bpe-Chr7:3625639 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g811 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe05g00361 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003442 4 1 1 2 3 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 5 3 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00361 Bpe_Chr05 FPKM 4.826826 6.986381 54.4445 55.865791 35.397594 37.875401 35.086754 34.106792 33.27317 34.817944