Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00368 ATGGGTATATCTGCAAATCATAGGGGCTCGAGAGCTGGGACGAATCAGGACGGTTTGCCCGTACAAAATGAGATTCTTCCGACGGCGACGCAGAAGAAATGGACTAATCTGACGCCTGTAGTCGTAGCCCTTGTTGTTTTTGCAGAAATTGCCTTTCTGGGTCGCCTCGACTTGGCTAAAAACAGTGCCTTGGTCGATTCCTGGGCCGACCTGTTCTATCAGTCACCTTCGTCGCGGGAGGCGTTGTTGGGAGTTGATGATTTTAATTCTGGATCTATTGTTCGCAATGAGATTGTGGAATTTGAGAGCTGCGAGGATTGGTTAAAGAAAGAAGACGCTGTTGTGTATTCAAGGGATTTTGGAAAAGAACCCATCTTTGTTTCTGGTGGTGAGAAGGAGTGGAGATCTTGTGCAGTGGGATGTGAATTTGGATCAAATCCTAGTAAGAAGCCTGATGCTGCATTTGGTTTATATGGTGGACCAAATGGTATACTCCGTTCCATGGAATCGGCCCAGTACTATGCAGAGAACAATATTGCAATCGCACGACGGAAAGGTTATAGTATTATAATGACCACGAGTCTCTCGTCAGATGTTCCCGTTGGATATTTTTCGTGGGCGGAGTATGATATCATGGCACCAGTACAACCAAAGACTCAGACATCTCTTGCAGCTGCTTTTATTTCAAATTGCGGTGCTCGTAACTTTCGGTTGGAAGCTCTGGAGGCTCTTGAAAAATTCAAAATCAATATTGATTCTTATGGTGGTTGCCACAGGAATCGTGACGGAAGAGTGAATAAGGTGGAGGCTCTGAAGCGATATAAATTTAGCCTGGCATTCGAGAACTCCAATGAAGAGGATTATGTCACTGAAAAATTTTTCCAATCTCTTGTAGCAGGAACAATTCCGGTGGTGGTTGGGGCTCCAAATATAGAAGATTTTGCTCCTTCTCCGGGTTCAATTTTACATATAAAGGAGCCTTCAGATGTTGAGCCGGTTGCAAAAGCCATGAAATATCTTTCAGAAAATCCAGATGTATATAACCAGTCATTGAAATGGAAATATGAAGGTCCATCTGATTCATTCAAGGCCCTAGTGGATATGGCAGCAGTTCATTCATCATGCCGGCTTTGCATTCACTTGGCGACATCCATTCGGGATAAAGAAGAAAAGATGCCTGGCTTTAAGAAACGTCCTTGCAAGTGTACGAGAGGCTCACAGACCGTGTACCATTTATATGTCAGAGAAAGAGGGAGGTTTGATTTTGAGTCAATTTTCTTAAGGTCGGGAAATTTAACATTGGCGGCTCTTGAGTCGGCGGTGCTCGAAAAGTTCAGTTCTAAAAAGCATATTCCGATATGGAAGGAGGAAAGACCTGAAAGCATAAGAGGTGGGGATGAACTGAAAGTGTATAGAATATATCCTCTTGGGTTGACTCAAAGACAGGCATTGTATAGCTTCAGACTAAAAGAGGATTCTGATCTGAGAAATCAAGTGGAGAGTCATCCCTGTGCAAAGCTTGAAGTCATCTTTGTTTAG 1539 43.53 MGISANHRGSRAGTNQDGLPVQNEILPTATQKKWTNLTPVVVALVVFAEIAFLGRLDLAKNSALVDSWADLFYQSPSSREALLGVDDFNSGSIVRNEIVEFESCEDWLKKEDAVVYSRDFGKEPIFVSGGEKEWRSCAVGCEFGSNPSKKPDAAFGLYGGPNGILRSMESAQYYAENNIAIARRKGYSIIMTTSLSSDVPVGYFSWAEYDIMAPVQPKTQTSLAAAFISNCGARNFRLEALEALEKFKINIDSYGGCHRNRDGRVNKVEALKRYKFSLAFENSNEEDYVTEKFFQSLVAGTIPVVVGAPNIEDFAPSPGSILHIKEPSDVEPVAKAMKYLSENPDVYNQSLKWKYEGPSDSFKALVDMAAVHSSCRLCIHLATSIRDKEEKMPGFKKRPCKCTRGSQTVYHLYVRERGRFDFESIFLRSGNLTLAALESAVLEKFSSKKHIPIWKEERPESIRGGDELKVYRIYPLGLTQRQALYSFRLKEDSDLRNQVESHPCAKLEVIFV 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 17777399 17785112 + Bpe017782.1 Bpe05g00368 104145

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00368 512 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 107 388 - -
Bpe05g00368 512 Gene3D - 168 361 IPR038577 -
Bpe05g00368 512 Pfam Glycosyltransferase family 10 (fucosyltransferase) C-term 219 386 IPR001503 GO:0006486|GO:0008417|GO:0016020
Bpe05g00368 512 MobiDBLite consensus disorder prediction 1 20 - -
Bpe05g00368 512 PANTHER BNAA06G03030D PROTEIN 35 490 - -
Bpe05g00368 512 PANTHER ALPHA- 1,3 -FUCOSYLTRANSFERASE 35 490 IPR001503 GO:0006486|GO:0008417|GO:0016020
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00368 K00753 E2.4.1.214; glycoprotein 3-alpha-L-fucosyltransferase [EC:2.4.1.214] - zju:107427081 776.548
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00368 Bpe-Chr5:17777399 Bpe14g00406 Bpe-Chr14:3799267 6.68E-16 dispersed
Bpe05g00368 Bpe-Chr5:17777399 Bpe07g00377 Bpe-Chr7:3245887 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe11g01651 . 84 566 Xyloglucan Fucosyltransferase1 AT1G14080 54.7 5.4e-154 541.2
Bpe11g01651 . 97 567 Xyloglucan Fucosyltransferase1 AT1G14100 56.1 6.2e-155 544.3
Bpe11g01651 . 94 570 Xyloglucan Fucosyltransferase1 AT1G14110 52.3 8.2e-138 487.3
Bpe05g00368 . 1 512 Xyloglucan Fucosyltransferase1 AT1G49710 64.4 1.2e-190 662.9
Bpe07g00377 . 1 511 Xyloglucan Fucosyltransferase1 AT1G49710 63.8 7.7e-190 660.2
Bpe14g00406 . 1 403 Xyloglucan Fucosyltransferase1 AT1G71990 68.6 1.5e-161 565.8
Bpe11g01651 . 3 566 Xyloglucan Fucosyltransferase1 AT2G03210 55.0 4.7e-180 627.9
Bpe11g01651 . 2 564 Xyloglucan Fucosyltransferase1 AT2G03220 59.8 8.3e-198 686.8
Bpe11g00399 . 8 489 Xyloglucan Fucosyltransferase1 AT2G03220 52.1 1.5e-146 516.5
Bpe11g01651 . 99 566 Xyloglucan Fucosyltransferase1 AT2G15350 51.8 5.4e-143 504.6
Bpe11g01651 . 94 566 Xyloglucan Fucosyltransferase1 AT2G15370 51.8 2.6e-140 495.7
Bpe11g01651 . 99 566 Xyloglucan Fucosyltransferase1 AT2G15390 53.9 5.2e-149 524.6
Bpe05g00368 . 1 512 Xyloglucan Fucosyltransferase1 AT3G19280 63.8 1.8e-188 655.6
Bpe07g00377 . 1 511 Xyloglucan Fucosyltransferase1 AT3G19280 63.5 2.4e-188 655.2
Bpe11g01651 . 3 566 Xyloglucan Fucosyltransferase1 AT2G03210 55.0 4.7e-180 627.9
Bpe11g01651 . 2 564 Xyloglucan Fucosyltransferase1 AT2G03220 59.8 8.3e-198 686.8
Bpe11g00399 . 8 489 Xyloglucan Fucosyltransferase1 AT2G03220 52.1 1.5e-146 516.5
Bpe11g01651 . 3 566 Xyloglucan Fucosyltransferase1 AT2G03210 55.0 4.7e-180 627.9
Bpe11g01651 . 99 566 Xyloglucan Fucosyltransferase1 AT2G15390 53.9 5.2e-149 524.6
Bpe11g01651 . 94 566 Xyloglucan Fucosyltransferase1 AT2G15370 51.8 2.6e-140 495.7
Bpe11g01651 . 84 566 Xyloglucan Fucosyltransferase1 AT1G14080 54.7 5.4e-154 541.2
Bpe11g01651 . 97 567 Xyloglucan Fucosyltransferase1 AT1G14100 56.1 6.2e-155 544.3
Bpe11g01651 . 94 570 Xyloglucan Fucosyltransferase1 AT1G14110 52.3 8.2e-138 487.3
Bpe11g01651 . 99 566 Xyloglucan Fucosyltransferase1 AT2G15350 51.8 5.4e-143 504.6
Bpe05g00368 . 1 512 Xyloglucan Fucosyltransferase1 AT3G19280 63.8 1.8e-188 655.6
Bpe07g00377 . 1 511 Xyloglucan Fucosyltransferase1 AT3G19280 63.5 2.4e-188 655.2
Bpe05g00368 . 1 512 Xyloglucan Fucosyltransferase1 AT1G49710 64.4 1.2e-190 662.9
Bpe07g00377 . 1 511 Xyloglucan Fucosyltransferase1 AT1G49710 63.8 7.7e-190 660.2
Bpe14g00406 . 1 403 Xyloglucan Fucosyltransferase1 AT1G71990 68.6 1.5e-161 565.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001699 7 4 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 4 1 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00368 Bpe_Chr05 FPKM 26.071112 34.419514 0.228706 0.0 0.0 0.0 0.284095 0.0 0.0 0.0