Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00370 ATGATCTCATCGGATGAAACATGTACCCACTCTGCTAGTCATGGTGCTCAGAGCTTTGATGGTTGGATTTCTGATGAACCTAGTTACAGGATTAATTTGCAGAATGATATAGACAATGAACAGCTAAAAAGGGAGCATTTTTGGTCTAATACCTGTTCCGGGAATACCCCAGAAGAGGGACAACTAGAGGCATCTAACTCCCTTTTTCGTGGGAGAACTGATTTTGGTTCCAGTAATTATCAGATTAGAGACAGGACATTGTTTTCGCAAGGTTCGACCTCCAATGTTACTTATAATAATGAAAGTCTAGATGCTGAGTATGTTGGAAATAGCAACATTAGCAGGCTTGGAGTTGGATCTGGTTGTTCTAATTCGTACAAGTCAAGTCAACCAGAGATAGGGCAAACTTCTTCAGTTTCCTTTTGTCGTAATTCATCTGGAGGCACTCGTAATATGATAGTGGAAAGTGATGGTGGGCCCAGTTCTTCAGGTTCATGGGGATTATCCTGCAAGAGACAAGCCCTTGAAGGAACTTCCAGGCAGTTTTATCCTGGTGGAAGTTCTGGCTCCTTCCTACAGCCAGAGCAGGGTATGTTACGCACTGGCACTGCTTTTTCTGGTCCTTCTAGCAGTGTAAGTTTATCCCCTCCTTCTCAGGTATCTCATAGCAGTGGTCTTCCTGAGCTGCAGAACTCAAGCATCAGTGCTAGTGGAATGAGAACAGTTTCTGATGTCTTCACTTCTTCAAGCATTACGAATGAGAGACCTTTGAGCACTTTGGGTAGGATGGCTGCTTTGAGGACTTCACAAGACTATGTGCCATTTAGTATATTATCTTCTGGAATCGCAAGGCACCCAAGCCCAGCTCACTTTAGAGATTCTGTGGAGAGATCATCAGCAATTTCAGCTGTCAGTTCAGGAGGAACCCCAGGACTTTCTCATGGTAATGAAGTTCCTGGCATTTCGAGAGATCCTCGTCCTTTAACCTGGGATGGAGGTTGCACTTCAAGAAGCGAAAGCTTGTCAAGTTTACCTGGACATAGAAGTCTACACGTAGACTTAAATCTAGGTTGCTATTCGCGAAACAATACAGAATATCACATGGTTTTACCTGCAACGGAGACAAGAAACTCAACTCATGATCCAACTAGCTGGAGTTTAGAAACTGAAAACGTAAGCAATCCATTTTGCAGTCCTACTTCTCAAACTAGCCCTAGTTCTAGCATTGATACTTTACCAAATTCGGCATTAATTCTCAACCCTCCTAGAGAAAATCACAGAAGGTTATTAGAATTTGCACCTTGGTCTTTGTTTCCTTCCACTGATGTTGAATCTGGAGTTCATAGTGATCACTTGTATCCATCACTTGTAGCTCCTACTTCCGCACGTGAATCAACTCTGTCATCTGGACCTAATAGCTGTAGGTATCATCAATCTCATCCTAGGTCTGCTTTCTTTATGGAGAGAAGACTGGGTGATGATATTCCGGGTACTACACATTCATTACGCTCTCTAGGTGCTAACATTGAGGGCAGGCGCCAACTAATAACTGAGGTCATTGCCTCGAATCACCACTTGCATATTTTGTTTCAGAAATTGACTTTTAACCGGCAATGTCAGGATCATATGCTGTTTGACCCATTCATTTACCATGGTATGGCTGAAATTCATGATAGGCATAGGGGCATGCGCCTCGATGTTGACAACATGTCCTATGAGGAGTTATTGGCACTAGAAGATCGCATAGGAGATGTTAGCACAGGACTAAGTGAAGATGTGATTTTGAAGATCTTGAAACAACAAAAATATGAGTTACTCAAAACGCCAACTCCAGATTTGGAACCCTGTTGCATCTGTAAGGTACAAGTTACAATTGATCTCACACGGTCAAAATTACAGGAGGAATATGCTGATGCAGATATTGTTGGGATGCTAGATTGTGGGCACAATTTCCATTCCAACTGCATTAAGCAGTGGCTTGTGCTGAAGAACCTGTGTCCCATTTGTAAAACAACAGCCTTGCCTAAATGA 2031 42.69 MISSDETCTHSASHGAQSFDGWISDEPSYRINLQNDIDNEQLKREHFWSNTCSGNTPEEGQLEASNSLFRGRTDFGSSNYQIRDRTLFSQGSTSNVTYNNESLDAEYVGNSNISRLGVGSGCSNSYKSSQPEIGQTSSVSFCRNSSGGTRNMIVESDGGPSSSGSWGLSCKRQALEGTSRQFYPGGSSGSFLQPEQGMLRTGTAFSGPSSSVSLSPPSQVSHSSGLPELQNSSISASGMRTVSDVFTSSSITNERPLSTLGRMAALRTSQDYVPFSILSSGIARHPSPAHFRDSVERSSAISAVSSGGTPGLSHGNEVPGISRDPRPLTWDGGCTSRSESLSSLPGHRSLHVDLNLGCYSRNNTEYHMVLPATETRNSTHDPTSWSLETENVSNPFCSPTSQTSPSSSIDTLPNSALILNPPRENHRRLLEFAPWSLFPSTDVESGVHSDHLYPSLVAPTSARESTLSSGPNSCRYHQSHPRSAFFMERRLGDDIPGTTHSLRSLGANIEGRRQLITEVIASNHHLHILFQKLTFNRQCQDHMLFDPFIYHGMAEIHDRHRGMRLDVDNMSYEELLALEDRIGDVSTGLSEDVILKILKQQKYELLKTPTPDLEPCCICKVQVTIDLTRSKLQEEYADADIVGMLDCGHNFHSNCIKQWLVLKNLCPICKTTALPK 676
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 17815934 17820807 - Bpe017784.1 Bpe05g00370 104147

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00370 676 MobiDBLite consensus disorder prediction 300 346 - -
Bpe05g00370 676 Pfam RING-H2 zinc finger domain 615 670 IPR024766 GO:0008270
Bpe05g00370 676 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 582 674 IPR013083 -
Bpe05g00370 676 MobiDBLite consensus disorder prediction 200 231 - -
Bpe05g00370 676 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 6 674 - -
Bpe05g00370 676 ProSiteProfiles Zinc finger RING-type profile. 616 670 IPR001841 -
Bpe05g00370 676 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 6 674 IPR045191 GO:0061630
Bpe05g00370 676 SMART ring_2 616 669 IPR001841 -
Bpe05g00370 676 SUPERFAMILY RING/U-box 615 674 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00370 - - - jre:108988909 511.146
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00029 Bpe-Chr5:571815 Bpe05g00370 Bpe-Chr5:17815934 1.17E-53 dispersed
Bpe05g00370 Bpe-Chr5:17815934 Bpe14g00549 Bpe-Chr14:4738396 5.01E-26 dispersed
Bpe05g00370 Bpe-Chr5:17815934 Bpe02g01796 Bpe-Chr2:20219711 3.80E-59 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g743 . . . . . . . . Cmo05g00171 . . . . . Sed11g0938 . . Bhi04g00370 Tan02g1797 . . . . . Cla08g01584 Cam08g2081 Cec08g1664 Cco08g1793 Clacu08g1767 . Cre08g1552 Cone4ag1588 Cone7ag1361 Cone17ag0852 Cone20ag0198 . . . . . . . . . Bpe05g00370 . . . . . . Cma05g00173 Car05g00146 . Cpe11g00142 . . . . . . . . . . . . . . . Lsi08g01487 Csa02g01933 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015397 4 0 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 11
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00370 Bpe_Chr05 FPKM 87.947166 91.924034 52.622688 51.374382 129.029022 133.676483 129.514725 60.147614 58.395699 59.360085