Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00377 ATGGCTACCTCTGCTCACTCAATCCTCCGTACGCCGTCGATTCGAGATTCCTCTGTTTCGCTTTCCTCCAAGTTGCCGGTCTTTTCGCCACTATCCGTTCGTTTTCGCTCTCGTCGAACTCGATCGCACATCTTCGTTGTTGTGTCGGCAGGTCTCGATGCCAAGCCGACGGTTCTGGTTGCGGAAAAGCTCGGTGAAGCTGGTCTTTCACTTCTCAAGGACTTTGCTAATGTCGATTGTTCGTATAATCTTAGCTCGGAGGAGCTGTGCACTAAGATCTCTCTCTGTGATGCGCTTATTGTGCGTAGTGGAACAAAGGTCAGTCGCGAAGTGTTTGAATCTTCTGGAGGGAGGTTGAAGGTGGTTGGGAGGGCCGGGGTTGGTATTGACAATGTGGATCTCGCGGCGGCGACTGAGCATGGTTGCTTGGTGGTGAATGCGCCGACTGCCAATACTGTCGCTGCTGCGGAGCATGGGATCGCTCTCTTGACTGCTATGGCGAGGAACGTCGCCCAAGCCGACGCGTCTGTTAAAGCTGGAAAGTGGGAACGAACCAAGTATGTTGGTGTATCCCTCGTCGGAAAAACATTGGCTGTTATGGGTTTTGGGAAAGTTGGAACAGAAGTTGCTCGACGTGCAAAGGGACTTGGTATGCATGTGATTGCTCATGACCCATATGCCCCAGCTGATCGGGCCCGTGCCATAGGTGTGGAGCTTGTGAGCTTTGACGAAGCTATTGCAACTGCAGACTTCATCTCTTTGCACATGCCTCTGACAGCCTCTACTTCAAAAATTCTTAATGATGAAACTTTTGCTAAAATGAAGAAAGGAGTTCGTATAGTCAATGTTGCTCGGGGTGGGGTAATCGATGAAGAAGCTCTAGTGAGGGCGCTAGATGCTGGAACTGTTGCACAGGCAGCTCTTGATGTTTTCACAGAGGAACCACCTCCAAAAGATAGCAAGTTGGTTCTTCACGAGAAAGTTACTGTAACACCTCACCTTGGAGCCAGTACCGTGGAAGCACAGGAAGGTGTGGCTATTGAAATTGCTGAAGCTGTAGTTGGAGCCTTGAGAGGGGAGCTTGCAGCGACTGCAGTTAATGCCCCCATGGTTCCTGCAGAGGTCTTAACTGAACTGAAACCGTATGTTTTACTGGCTGAGAAATTGGGAAGACTGGCCGTCCAACTTATAGCTGGAGGAAGTGGTGTTAAAACTGTGAAAGTGACCTATGGTTCATCGAGAGCTCCTGATGATCTTGACACCAGGCTTCTCCGTGCCATGATAACAAAGGGTCTGATTGAGCCGATATCCAGTGTTTTCGTGAACTTGGTCAATGCTGATTTTACTGCTAAACAGCGGGGACTGAGAATAACCGAAGAGCGAATTGTTCTAGATGGATCCCCAGAAAATCCACTGGAGTTTGTTCAAGTTCAGATCGCCAATGTGGAGTCAAGATTTGCAAGTGCAATATCAGATTCAGGAGATATAAGGGTTGAAGGACGGGTAAAGGATGGAGTTCCTCACCTGACAAAAGTTGGATCTTTTGACGTTGACGTGAGTTTGGAAGGTAGTATTATTCTCTGCAGACAGGTTGATCAGCCAGGTATGATTGGAAAGGTGGGGAGCATTTTAGGAGAGGAGAATGTAAATGTCAGCTTCATGAGCGTAGGCAGAATCGCTCCAAGAAAGCAAGCTCTAATGGCTATAGGAGTGGATGATCAACCCAGCAAGGAATCCTTGAATAGTATAGGCAAAATTTCGGCAGTCGAGGAGTTTGTCTTCCTGAAATTGTAG 1794 48.38 MATSAHSILRTPSIRDSSVSLSSKLPVFSPLSVRFRSRRTRSHIFVVVSAGLDAKPTVLVAEKLGEAGLSLLKDFANVDCSYNLSSEELCTKISLCDALIVRSGTKVSREVFESSGGRLKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNVAQADASVKAGKWERTKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMHVIAHDPYAPADRARAIGVELVSFDEAIATADFISLHMPLTASTSKILNDETFAKMKKGVRIVNVARGGVIDEEALVRALDAGTVAQAALDVFTEEPPPKDSKLVLHEKVTVTPHLGASTVEAQEGVAIEIAEAVVGALRGELAATAVNAPMVPAEVLTELKPYVLLAEKLGRLAVQLIAGGSGVKTVKVTYGSSRAPDDLDTRLLRAMITKGLIEPISSVFVNLVNADFTAKQRGLRITEERIVLDGSPENPLEFVQVQIANVESRFASAISDSGDIRVEGRVKDGVPHLTKVGSFDVDVSLEGSIILCRQVDQPGMIGKVGSILGEENVNVSFMSVGRIAPRKQALMAIGVDDQPSKESLNSIGKISAVEEFVFLKL 597
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 17947635 17950455 - Bpe017791.2 Bpe05g00377 104154

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00377 597 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 274 290 IPR029753 -
Bpe05g00377 597 Pfam D-3-phosphoglycerate dehydrogenase intervening domain 378 489 IPR045626 -
Bpe05g00377 597 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 55 184 - -
Bpe05g00377 597 Gene3D - 60 360 - -
Bpe05g00377 597 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 154 336 IPR036291 -
Bpe05g00377 597 CDD ACT_3PGDH-xct 526 597 - -
Bpe05g00377 597 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 197 224 IPR029752 -
Bpe05g00377 597 Gene3D - 151 333 - -
Bpe05g00377 597 PANTHER D-3-PHOSPHOGLYCERATE DEHYDROGENASE 34 592 - -
Bpe05g00377 597 PANTHER FORMATE DEHYDROGENASE 1 34 592 - -
Bpe05g00377 597 CDD PGDH_4 58 360 - -
Bpe05g00377 597 TIGRFAM PGDH: phosphoglycerate dehydrogenase 58 595 IPR006236 GO:0004617|GO:0006564
Bpe05g00377 597 SUPERFAMILY ACT-like 515 593 IPR045865 -
Bpe05g00377 597 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 160 335 IPR006140 GO:0051287
Bpe05g00377 597 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 245 267 IPR029753 -
Bpe05g00377 597 SUPERFAMILY Serine metabolism enzymes domain 373 519 IPR029009 -
Bpe05g00377 597 SMART AdoHcyase_NAD_2 185 339 IPR015878 -
Bpe05g00377 597 Gene3D - 372 523 IPR029009 -
Bpe05g00377 597 ProSiteProfiles ACT domain profile. 525 597 IPR002912 -
Bpe05g00377 597 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 58 367 IPR006139 GO:0016616|GO:0051287
Bpe05g00377 597 Pfam ACT domain 525 575 IPR002912 -
Bpe05g00377 597 Gene3D - 524 597 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00377 K00058 serA, PHGDH; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] - csv:101221689 990.719
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00699 Bpe-Chr3:27123701 Bpe05g00377 Bpe-Chr5:17947635 0 dispersed
Bpe05g00377 Bpe-Chr5:17947635 Bpe15g00125 Bpe-Chr15:11076303 0 dispersed
Bpe05g00377 Bpe-Chr5:17947635 Bpe02g01488 Bpe-Chr2:18172098 1.97E-25 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g717 Blo01g01516 . Bda01g00578 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag1109 Cone3ag0997 Cone10ag1017 . . . . Blo17g00896 . . . . Bpe05g00377 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001181 3 2 4 3 3 1 4 2 2 2 2 2 3 2 2 4 2 6 4 2 2 2 3 2 2 2 2 3 2 3 78
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00377 Bpe_Chr05 FPKM 0.0 0.0 0.0 0.327053 0.0 0.0 0.0 0.0 0.0 0.98446