Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00386 ATGGCCGCCCAAGTTGGAGAAGAAATACTCAGCAAAGTCTCTCTCAATGCAAGCTCTACCAGAGGAAGAGTCATCACCTGCAAGGCTGCCGTTGCTCGGGGTCCGGCGCAGCCGTTTGTGGTGGAGGAAATTCGAGTAGACCCGCCGCGGAAGAAGGAGGTTCGAGTTAAAATTATCTACACTTCAATCTGTCACACCGATCTCAGTGCTTGGAAAGGGGAGAATGAATCTCAAAGAGCTTACCCTCGAATCCTTGGCCACGAAGCAGCAGGAGTGGTGGAGAGCGTGGGGGAGGAGGTGAAGGAGTTGAAAGAAGGGGATTACGTTGTTCCTCTGTTCAACGGAGAGTGTGGGGAGTGCGATTACTGCGGGAGTGAGAAGACGAACATGTGCGAGGCGTTCGGGGTAAATCCGATGAAGACGGTAATGGCAGCCGATGGAAAGTGCAGGTTTTGGACGATTGATGGGAATCCCATCTTCCATTTCCTTAACACCTCTACTTTCACTCAGTTTACTGTTCTTGATTCTGCCTGTGTTGTTAAGATCGATCCCCAGCTTTCTCTCAAGAAGATGACCCTCTTAAGCTGCGGTGTCTCCACTGGAGTTGGAGCTGCGTGGAACACCGCAAATGTGGCAGCCGGATCGATAGTTGCAGTTTTTGGTTTGGGTGCAGTGGGATTGGCTGTTGCTGAGGGAGCAAGATCTAGAGGAGCATCCAGAATCATAGGTGTGGATATCAACCCAGAGAAGTTCATAAACGGGAGAAATATGGGAATAACAGACTTCATAAACCCACTAGACAGCGACAAACCAGTGAACGAGAGAATACGAGAAATGACGAGGGTTGGAGTGGACTATAGCTTTGAATGTGCAGGAAATATTGATGTTCTACGAGAGGCCTTCTTGTCAACACGGCCTGGATGGGGATTGACTGTTGTGCTGGGGATTCATCCAACGCCGAGGATGCTTCCTCTTCATCCAATGGAGCTTTTCTCTGGACGAACCATCGTTGCTTCTGTCTTTGGTGGTTTCAAGGGCAGGTCTCAGCTTCCTTCTTTTGCTCACCAGTGCATTCGTGGTGATGTGAATTTGGATGAATTCATAACTCATGAGCTTCCATTGGAGAATATAAACGAGGCACTTCAGCTGCTGATAGAAGGAAAATGTCTTCGATGCCTTTTACATCTCTAA 1191 48.87 MAAQVGEEILSKVSLNASSTRGRVITCKAAVARGPAQPFVVEEIRVDPPRKKEVRVKIIYTSICHTDLSAWKGENESQRAYPRILGHEAAGVVESVGEEVKELKEGDYVVPLFNGECGECDYCGSEKTNMCEAFGVNPMKTVMAADGKCRFWTIDGNPIFHFLNTSTFTQFTVLDSACVVKIDPQLSLKKMTLLSCGVSTGVGAAWNTANVAAGSIVAVFGLGAVGLAVAEGARSRGASRIIGVDINPEKFINGRNMGITDFINPLDSDKPVNERIREMTRVGVDYSFECAGNIDVLREAFLSTRPGWGLTVVLGIHPTPRMLPLHPMELFSGRTIVASVFGGFKGRSQLPSFAHQCIRGDVNLDEFITHELPLENINEALQLLIEGKCLRCLLHL 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18142131 18161505 + Bpe017803.1 Bpe05g00386 104163

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00386 396 SUPERFAMILY GroES-like 20 210 IPR011032 -
Bpe05g00386 396 Gene3D - 30 391 - -
Bpe05g00386 396 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 186 358 IPR036291 -
Bpe05g00386 396 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 86 100 IPR002328 GO:0008270|GO:0016491
Bpe05g00386 396 Pfam Alcohol dehydrogenase GroES-like domain 52 137 IPR013154 -
Bpe05g00386 396 PANTHER ALCOHOL DEHYDROGENASE 20 395 - -
Bpe05g00386 396 Pfam Zinc-binding dehydrogenase 224 343 IPR013149 -
Bpe05g00386 396 Gene3D - 201 339 - -
Bpe05g00386 396 SUPERFAMILY GroES-like 345 395 IPR011032 -
Bpe05g00386 396 PANTHER ALCOHOL DEHYDROGENASE-LIKE 3 20 395 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00386 K00001 E1.1.1.1, adh; alcohol dehydrogenase [EC:1.1.1.1] - jre:109021046 582.022
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe05g00386 Bpe08g00906 CCT
Bpe05g00386 Bpe08g00906 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00386 Bpe-Chr5:18142131 Bpe08g00906 Bpe-Chr8:11523507 0 dispersed
Bpe15g00392 Bpe-Chr15:15445271 Bpe05g00386 Bpe-Chr5:18142131 8.26E-14 dispersed
Bpe05g00386 Bpe-Chr5:18142131 Bpe02g01599 Bpe-Chr2:18891026 6.90E-97 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g254 . . . . Bpe05g00386 . Bma07g01033 . . . Cma02g00945 Cma15g01322 Car02g00694 Car15g01187 . . Cpe05g00768 . . . . . . . . . . . . . . . Cone12ag0581 . . . Csa05g00159 Chy09g01339 . . . . Bda09g00635 Bpe08g00906 . Bma05g00537 . . Cmo02g00954 Cmo15g01385 . . . . . . Bhi12g00080 . . Lac11g1903 Hepe06g1432 . Lcy12g1511 Cla01g00141 Cam01g0146 Cec01g0142 Cco01g0147 Clacu01g0141 Cmu01g0141 Cre09g2365 Lsi09g00132 . . Cme09g01886
Vvi18g663 . . . . . . . . Cmo05g00149 Cmo12g00532 . Cma09g00280 . Car12g00536 Sed05g2623 Cpe06g00192 Cpe07g00513 Bhi04g00407 Tan02g1017 Cmetu01g0451 . Hepe08g1326 . Lcy13g2128 Cla08g01614 Cam08g2116 Cec08g1701 Cco08g1824 Clacu08g1801 . Cre08g1583 . . Cone17ag0882 Cone20ag0228 Lsi04g01495 Csa04g02466 . Cme03g02095 Blo17g00863 . . . . Bpe05g00386 . Bma05g00054 . . Cmo09g00274 Cma12g00592 Cma05g00148 Car05g00128 Car09g00236 Cpe11g00126 . Bhi09g03240 . . . Hepe01g1820 Mch11g0354 . Cla05g02098 Cam05g2251 Cec05g2270 Cco05g2312 Clacu05g2247 Cmu05g2110 Cre05g2233 Lsi08g01518 Csa02g01902 Chy07g00180 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008094 1 1 1 2 2 1 2 0 0 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00386 Bpe_Chr05 FPKM 56.651066 58.617912 59.629883 58.407452 77.852539 82.565475 83.594177 71.771843 68.619827 74.00901