Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00390 ATGACAATTCCTAGTTCGGGTTCAATGATGGAAGATGGAGGGCCGAGTTGCTTGCCACTTACTCCTGAGGAAGAGAATCGCATCTTTACAGAATTGATTCGCGAATCTGAGTCTAATTTGGAAGATGGAAATTTCTACTACGTTATTTCCAACAGATGGTTTACAAGGTGGACGAAGTACGTTGGTCTATGTACCAAGGAATATTCAATGGATGAGCAGTCTTCTGATACTCAAGCATTAGATATCATTCCATCAAAGTTAGCTGACAGACCTGGACCTATTGATAACTCTGATATTATTTTAGATGGAAAAATTTTTGGGAGCAATGATTTAGAGCTCCGAAAGATGCTGGAGGAAGGGCTGGACTATGTTTTAGTTCCTCAATCAGTTTGGAAAAAGCTTTTAGATTGGTACACTGGAGGACCCGCTTTACAGAGAAAGTTGATTGCACAAGGTGTTCACAAGAACTTTGATGTGGAGGCTACTGTTGGTGAGCTTCTTGAGAACGTATGCACACTTAAAGGAATAGAAAGGGAAGAGATGAGTCTGTGGGACTATTTCAACAAGCAAAAACAGTCAGTATTGGATTGTTCAAGTCAAACTCTCGAAGAATCGAACTTACAGATGGATCAAGATGTTCTTCTTGAAGTAAAGTTTGAGGGACGTTCATCTGAGAATTCTATGGATTCAACAGGAAATGAGTTTGCTTTGGTAGCTATAGAACCTTCCCGTTCACCTTTGTCAATTGCTGGGGGGCCTATTATGTCAAATGGCCATTCAACTGGCAATAGTCTATATCAGGGACATTCTATTGGTTCATCAGGTATTGAAACAGATGATTTAACTAATCATGAGATAAAGAAAGAGAAGGGAGGTTTGGCTGGGTTGCAGAATCTGGGTAATACGTGTTTCATGAACAGTGCAATTCAATGTCTAGTCCACACGCCTCCTGTTGTTGAGTATTTCTTGCAAGATTACTCTGAGGAGATTAACGTTGAAAATCCATTAGGGATGCGCGGGGAGCTTGCTCTTACATTTGGTGAACTGTTGAGGAAATTATGGTCACCAGGGCGAACTGCAATTGCTCCACGCGTATTTAAGGGAAAATTAGCTCGCTTCGCTCCTCAATTTAGTGGTTACAACCAGCACGATTCTCAAGAACTCCTCGCCTTCTTGTTGGATGGACTGCATGAAGATTTGAACCGTGTGAAGCAAAAGCCTTACTTTGAAATGAAGGATTCTGATGGTCGTGCAGATGAGGAAATTGCTGATGAGTGTTGGAGATACCACAAAGCAAGGAATGATTCATTGATTGTTGATGTTTGCCAAGGTCAATATAAATCAACACTGGTCTGTCCAGAATGTGGCAAAATCTCAATAACATTTGATCCTTTTATGTACTTATCATTGCCACTACCGTCAACTCTGACTCGGTCCATAACAGTGACTATATTTTATGGCGATGGTAGTGGTCTTCCAATATCATACACTGTGACTGTACCAAAACATGGTTCCTGTAAAGATCTGTCCACAGCTTTAGGTGCTGCTTGTTGTTTGAAAAATGATGAAGTCCTTCTGCTTGCAGAGATTTATGATCATCGTGTGTATCGTTATTTTGAGAATCCTTTTGAGCAACTGACTTCTATAAAAGATGAAGAATATATTGTAGCCTACCGCTTCTTTGAAAGAGATGTGGGAAGATCAAAACTAGAGATTATTCATCGATGTCAGGACAATTCATCAGATCGTTTGAAGGGCATTGAGAGAGAGCTTTTTGGAACTCCACTTGTTGCCTTTTTAGGAGAAGAGCAACAGGGGGCAGCTGATATCAATGCAGTTGTCTCCAAAATTCTCTCTCCTATGAGAAGAACATATTCGACGAACAAGATGCTCAGCGGCAGGGAAAATGGAGTTGTTTCAGAGATGGTTATCGAACCTTTAACCAGCTGCAATGGCCAAACTGAGCCGATGGATCAATCAACCAATGCAAATCACATAGAGTATACATCTGATGACAAATTACCTTTTCAGCTTCTTTTGATGGATGAAAGGGGTTTGGGCGGCAAACCTATCGTGAAGAACTCTCTCGTGAAACCTGATAAGCGGGTGAAGGTTTTTCTAGACTGGACCCAAAAAGAACATGAATTTTATGATGCAAGGTACCTTAAGGATCTTCCATTTGTCTGTCAGACAAGGTTTGTGAAGAAAACACTGGAGGAAGCTATCTCTTTGTTTTCATGCTTGGAGGCATTCCTGAGTGAAGAACCTTTAGGTCCTCATGACATGTGGTACTGTCCTAGGTGCAAAGAGCATAGGCAAGCCTCTAAGAAGCTAGACTTGTGGAAGCTGCCGGAGATTATTGTATTTCACTTGAAACGATTCTCATTCAGCAGATATCAGAAGACAAAGTTGGACACTTTCGTTGATTTTCCTATTCACAATCTTGACTTGAGCAAATATGTGAAAAGCAGAGATGGAACATCTCATGTGTATGATCTATATGCCATCAGCAACCATTATGGTGGTCTAGGAGGCGGACACTACACTGCCTATGCCAAGTTGATAGATGAGAATAGATGGTATCATTTTGATGACAGTCATGTTTCTGTTGTTGGAGAATCTGATATCAAGACATCAGCTGCTTACTTGTTGTTTTATCAAAGAACGAGCAAAACACGGGCATGCACGGGCGAGACATCATAG 2703 41.07 MTIPSSGSMMEDGGPSCLPLTPEEENRIFTELIRESESNLEDGNFYYVISNRWFTRWTKYVGLCTKEYSMDEQSSDTQALDIIPSKLADRPGPIDNSDIILDGKIFGSNDLELRKMLEEGLDYVLVPQSVWKKLLDWYTGGPALQRKLIAQGVHKNFDVEATVGELLENVCTLKGIEREEMSLWDYFNKQKQSVLDCSSQTLEESNLQMDQDVLLEVKFEGRSSENSMDSTGNEFALVAIEPSRSPLSIAGGPIMSNGHSTGNSLYQGHSIGSSGIETDDLTNHEIKKEKGGLAGLQNLGNTCFMNSAIQCLVHTPPVVEYFLQDYSEEINVENPLGMRGELALTFGELLRKLWSPGRTAIAPRVFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYFEMKDSDGRADEEIADECWRYHKARNDSLIVDVCQGQYKSTLVCPECGKISITFDPFMYLSLPLPSTLTRSITVTIFYGDGSGLPISYTVTVPKHGSCKDLSTALGAACCLKNDEVLLLAEIYDHRVYRYFENPFEQLTSIKDEEYIVAYRFFERDVGRSKLEIIHRCQDNSSDRLKGIERELFGTPLVAFLGEEQQGAADINAVVSKILSPMRRTYSTNKMLSGRENGVVSEMVIEPLTSCNGQTEPMDQSTNANHIEYTSDDKLPFQLLLMDERGLGGKPIVKNSLVKPDKRVKVFLDWTQKEHEFYDARYLKDLPFVCQTRFVKKTLEEAISLFSCLEAFLSEEPLGPHDMWYCPRCKEHRQASKKLDLWKLPEIIVFHLKRFSFSRYQKTKLDTFVDFPIHNLDLSKYVKSRDGTSHVYDLYAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSVVGESDIKTSAAYLLFYQRTSKTRACTGETS 900
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18190128 18199059 + Bpe017807.1 Bpe05g00390 104167

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00390 900 MobiDBLite consensus disorder prediction 1 20 - -
Bpe05g00390 900 Gene3D - 149 223 - -
Bpe05g00390 900 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 295 310 IPR018200 GO:0004843|GO:0006511
Bpe05g00390 900 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 10-RELATED 15 160 - -
Bpe05g00390 900 Gene3D Cysteine proteinases 277 490 - -
Bpe05g00390 900 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 294 889 IPR028889 -
Bpe05g00390 900 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 10-RELATED 174 890 - -
Bpe05g00390 900 Gene3D Cysteine proteinases 700 896 - -
Bpe05g00390 900 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 174 890 - -
Bpe05g00390 900 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 15 160 - -
Bpe05g00390 900 SUPERFAMILY DUSP-like 17 149 IPR035927 -
Bpe05g00390 900 Pfam Ubiquitin carboxyl-terminal hydrolase 295 886 IPR001394 GO:0004843|GO:0016579
Bpe05g00390 900 Gene3D - 21 148 IPR035927 -
Bpe05g00390 900 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 831 848 IPR018200 GO:0004843|GO:0006511
Bpe05g00390 900 CDD Peptidase_C19R 735 887 - -
Bpe05g00390 900 SMART dusp 39 152 IPR006615 GO:0004843
Bpe05g00390 900 ProSiteProfiles DUSP domain profile. 20 149 IPR006615 GO:0004843
Bpe05g00390 900 SUPERFAMILY Cysteine proteinases 292 888 IPR038765 -
Bpe05g00390 900 Pfam DUSP domain 43 149 IPR006615 GO:0004843
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00390 - - - mcha:111023427 1282.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g01077 Bpe-Chr3:29971712 Bpe05g00390 Bpe-Chr5:18190128 0 dispersed
Bpe05g00390 Bpe-Chr5:18190128 Bpe13g01069 Bpe-Chr13:16284252 6.80E-12 dispersed
Bpe06g00285 Bpe-Chr6:13848083 Bpe05g00390 Bpe-Chr5:18190128 2.90E-11 transposed
Bpe05g00390 Bpe-Chr5:18190128 Bpe07g00359 Bpe-Chr7:2873436 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g257 . . . Bda08g00751 Bpe05g00390 . . . Cmo06g00541 . Cma02g00946 Cma15g01323 Car02g00695 Car15g01188 . . Cpe05g00767 . . . . . . . . . . . . . . . . . . . Csa05g00158 Chy09g01340 . . . . . . . Bma05g00539 Bma12g00420 . Cmo02g00955 Cmo15g01386 Cma06g00538 . Car06g00476 . Cpe08g00954 . Bhi12g00079 . . . . . Lcy12g1510 Cla01g00140 Cam01g0145 . . Clacu01g0140 Cmu01g0140 Cre09g2366 Lsi09g00131 . . Cme09g01887
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005583 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00390 Bpe_Chr05 FPKM 14.428432 19.173109 23.354647 25.965038 64.184845 55.91404 65.959564 6.551265 6.598284 6.125255