Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00397 ATGGAAATATGTTTTACAGCTTTTGAACAACAATCTAGCAATCCTTTTGCATCCCAATCAGGATTTCCACAAACTAGCATGGCAACTGCCAATCCTTTTGCTCCTAAACCCTTCGGCAGTACAAGTCCATTTGGTTCACAAACAGGCACTTCAATATTTGGTGGCACTTCAACTGGTGTCTTTGGTGCACCTCAGGCTTCTTCACCATTCTCTTCTACCACAACCTTTGGAGCTTCATCATCTCCTGCTTTTGGTACTACAATGTCTGCTTTTGGAGCTTCTTCTACTCCTGCTTTTGGTAGTTCATCATCAGCATTTGGAGGGTCGTCTGTCTTTGGGCAAAAGCCTGTTTTTGGAGGCTTTGGATCCACTCCTACTCAAACAAGTCCTTTTATGAGTACAATTCAACAATCTCAGCCAGCATTTGGCAGCAGCATATTTGGTTCATCCTCTCCATTTGGTGCAACTACAGCACCAGCATTTGGTGCAACAAGCACTCCAGCATTCGGCTCATCAAGCACCCCAGCATTCGGCTCATCAAGCACCCCAGCATTTGGTGCTACAAGCGCCCCATCCTTTGGGGCTACAAGTTCTCCAGTCTTTGGTGCTTCTACCACTCCTTTTGGTTCGACATCTAGTTTGCCATTCGGTAGCACAGGAAGTGCATTTGGTGTGTCAAGTTCCCCTGCTTTTGGATCTGGAGGAGCATTTGGAGCTTCAAACACTCCTGTTTTTGGTTCCCCAAGTACCTCTGCATTTGGCGCTTCAAGTGCACCTGTTTTTGGGGCATCTAACACTCCTGCTTTTGGAGCTTCTAGTTCTCCGACCTTTGGTTTTGGGTCTAGTCCGGCTTTTGGCCAGTCCACTTCTGCATTTGGAAGCAACACGGTTGGTTCTAATTCAACACCGTTTGGAACCCAGAGTTCTGCTTTTGGGGCTCAATCTACTACTCCAACTTTTGGCAACACTACTTTTGGTCAATCAACTTTTGGCAGTCAACGTGGAGGCACAAGAATAGCTGCTTACGCTCCTACTACTGAACCAGATAGTGGCAGTGGACCACTTCCTGCTGGTCAGTCAGCAGTAGGGGTTGGGTTTAATTCATCTACCCCATCACAGCCAAATCTTTTAACTTCATCTGCTACATTTGGCCAAGCTCCTTCTGCATTTGGTCAAGCACCTGCTAATCCCTTTTCAACCCCTACATCCTCCAATCCATTCGCTCCAAAAACTTCAGCGTTTGGAACAACATCAAATTTTTCTTTTAGTTCTTCAGCTTTTGCTCCTTCCACCTCTTCCAATCCTTTTGGATCAACAGTGTCACCATCAACGTCATCGTTTATATCAACATCTACTGCCCCATTTGGGAGCTCTCCTTCCTTATTTAATTCATCTAGTACACCTGCTTTTGGGTCTCAGTCCACCTTTGGCTCTGCTACTACTGCAGGAAGTACTCCGTCATTTGGTCCCAGCATTAATTTTGGTAACACTCAAACTTCCCCTTTGTTCCCAACTTCTACACCATCAATTGGGCCGACTGGTTCTGCATTTGGGCAGAGCACTTCCACCTTTGGACAAAATACTACTTCATTTGGTCAATCAAGCTTGGGTACCACACCTACATCTGTTTTTGGTAACAACCTTTTCTCGAGCGCACCATCACTAATGCCTTCCAGCACTCCAGCTTTTGGTCAATCGTCTTCCACTTTTTCCACACCTTTTCAACCTGCTCAAACACAGCCAGTTGGCGCATTTGGTTTTGGCAACTTTGGTCAGACCCAACTGGCTGGTACAAGTGGCATCGGTGGTACATCAAGCATCTTTGGACAGAATGGGTTTGGGCAATTTGGTTACTTAAAATACACTAAAAATGCTCTTAGCATCACCCCTGTTTGTGAAGGTAATTTGAGAGCTCTAGTAGGTAGTAGTCTGATTACGCAGCATTGTTCCAATAAAATGTTTCCCTTTTTCTTTAATTATAATAAAAAATTATTGTGCACTTCTATTTTTTCACATTTAGTGTTTCTGTACCTTCTTCATTCTTTTTCCTGCTATATTTTTAAAATTCAACATTGTCCATTTTATAGGTCTGCCAGTCATGCTTCTGTGGTTGCACAACCTGCACCAGTCACAAATCCATTTGGCACTCTCCCTGTGATGCCACAAATGTCAATTGGTCGGATTGGAAATACTTCTTCAATTCAATATGGTATTTCGAGCATGCCGGTTGTCGACAAACCTCCTCCTATGAAAATATCTTCCTTGTTGACTTCTCGACATTTGTCTCAACGAAGAATTAGGTTGCCTGCAAAAAAATATCATCCCAAGAAAGATGGTTCACAGGTTCCATTTTTTAGTGAAGATGAAGAAACACCTGGCACCCCAAATGCAGATGCCCTTTTTATTCCCAGAGAGAATCCTAGGTCGCTGGTCATTCGTCCTGCAGAACAGTGGTCTACAAGAACTAGTACAGAGAAATCTGCATCAATGAAAGATACATTTGGATTGCATGTGAATGGAAATTCTGTGGAAAATGGTCTAGAAAAGGAGCCCAATCAGCTTCATGGAGTAAACCTGAAAACAAATGGAAACCTGAAAACCAATGGATTCCATGAGGATAACATTCTAAAAGGGGAGACATATACGACTGTCAATGGCAATCGGGATGGTGAAGCTGCCATTGCCTATGAACATGGTGCAGACATCGAGGCATTAATGCCAAAACTCCAACTTGCTGATTACTATACAGAGCCTAAAATACAAGAATTAGCAGCCAAGGAGAGAGCTTATCCTGGATTTTGCTGCCATGTGAAGGACTTTGTGGTTGGCCGTCATGGTTTCGGAAGCATAAAATTCTTTGGCGAGACAGATGTAAGACGAATTGATTTTGATTCTCTTGTCCAGTTCAACAACCGCGAGGTGATCGTGTACATGGATGACACCAAGAAGCCGCCGGTAGGACAAGGTCTTAACAAACCGGCCGAGGTAACATTACTTAATATCAAATGTTTTGACAAGAAAACAGGTCGGCAATACACGGAAGGGCCAAAAGTTGAGAAATACAAGGATATGTTAAAGAGGAAGGCGGAAGACCAAGGTGCCGAGTTTGTCTCGTACGACCCTGTAAAAGGAGAGTGGAAGTTCAGGGTTAATCACTTCAGCAAGTACAGTGTGGGAGATGAAGATGAAGTTAGTGAATGGGAATGA 3207 43.84 MEICFTAFEQQSSNPFASQSGFPQTSMATANPFAPKPFGSTSPFGSQTGTSIFGGTSTGVFGAPQASSPFSSTTTFGASSSPAFGTTMSAFGASSTPAFGSSSSAFGGSSVFGQKPVFGGFGSTPTQTSPFMSTIQQSQPAFGSSIFGSSSPFGATTAPAFGATSTPAFGSSSTPAFGSSSTPAFGATSAPSFGATSSPVFGASTTPFGSTSSLPFGSTGSAFGVSSSPAFGSGGAFGASNTPVFGSPSTSAFGASSAPVFGASNTPAFGASSSPTFGFGSSPAFGQSTSAFGSNTVGSNSTPFGTQSSAFGAQSTTPTFGNTTFGQSTFGSQRGGTRIAAYAPTTEPDSGSGPLPAGQSAVGVGFNSSTPSQPNLLTSSATFGQAPSAFGQAPANPFSTPTSSNPFAPKTSAFGTTSNFSFSSSAFAPSTSSNPFGSTVSPSTSSFISTSTAPFGSSPSLFNSSSTPAFGSQSTFGSATTAGSTPSFGPSINFGNTQTSPLFPTSTPSIGPTGSAFGQSTSTFGQNTTSFGQSSLGTTPTSVFGNNLFSSAPSLMPSSTPAFGQSSSTFSTPFQPAQTQPVGAFGFGNFGQTQLAGTSGIGGTSSIFGQNGFGQFGYLKYTKNALSITPVCEGNLRALVGSSLITQHCSNKMFPFFFNYNKKLLCTSIFSHLVFLYLLHSFSCYIFKIQHCPFYRSASHASVVAQPAPVTNPFGTLPVMPQMSIGRIGNTSSIQYGISSMPVVDKPPPMKISSLLTSRHLSQRRIRLPAKKYHPKKDGSQVPFFSEDEETPGTPNADALFIPRENPRSLVIRPAEQWSTRTSTEKSASMKDTFGLHVNGNSVENGLEKEPNQLHGVNLKTNGNLKTNGFHEDNILKGETYTTVNGNRDGEAAIAYEHGADIEALMPKLQLADYYTEPKIQELAAKERAYPGFCCHVKDFVVGRHGFGSIKFFGETDVRRIDFDSLVQFNNREVIVYMDDTKKPPVGQGLNKPAEVTLLNIKCFDKKTGRQYTEGPKVEKYKDMLKRKAEDQGAEFVSYDPVKGEWKFRVNHFSKYSVGDEDEVSEWE 1068
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18261561 18268496 + Bpe017814.2 Bpe05g00397 104174

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00397 1068 MobiDBLite consensus disorder prediction 342 410 - -
Bpe05g00397 1068 PANTHER BNAC05G07920D PROTEIN 6 353 - -
Bpe05g00397 1068 ProSiteProfiles NUP C-terminal domain profile. 911 1053 IPR007230 GO:0005643|GO:0006913|GO:0017056
Bpe05g00397 1068 PANTHER NUCLEOPORIN 352 615 IPR037665 GO:0005643
Bpe05g00397 1068 PANTHER NUCLEOPORIN 6 353 IPR037665 GO:0005643
Bpe05g00397 1068 MobiDBLite consensus disorder prediction 362 410 - -
Bpe05g00397 1068 MobiDBLite consensus disorder prediction 473 536 - -
Bpe05g00397 1068 Gene3D Peptidase S59, nucleoporin 908 1060 IPR036903 -
Bpe05g00397 1068 Pfam Nucleoporin autopeptidase 913 1057 IPR007230 GO:0005643|GO:0006913|GO:0017056
Bpe05g00397 1068 PANTHER BNAC05G07920D PROTEIN 352 615 - -
Bpe05g00397 1068 PANTHER BNAC05G07920D PROTEIN 696 1063 - -
Bpe05g00397 1068 PANTHER NUCLEOPORIN 696 1063 IPR037665 GO:0005643
Bpe05g00397 1068 SUPERFAMILY C-terminal autoproteolytic domain of nucleoporin nup98 905 1060 IPR036903 -
Bpe05g00397 1068 MobiDBLite consensus disorder prediction 773 801 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00397 K14297 NUP98, ADAR2, NUP116; nuclear pore complex protein Nup98-Nup96 - csv:101222187 994.571
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00390 Bpe-Chr7:3483222 Bpe05g00397 Bpe-Chr5:18261561 1.25E-37 transposed
Bpe05g00397 Bpe-Chr5:18261561 Bpe07g00356 Bpe-Chr7:2838155 2.58E-12 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g291 . . . Bda08g00748 Bpe05g00397 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma05g00548 Bma12g00417 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003607 3 2 2 2 1 1 2 1 1 2 1 1 2 1 1 2 1 2 2 1 2 1 1 1 1 1 1 2 3 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00397 Bpe_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0