Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00402 ATGGAGGTCGATCTCTCACTCAACACAGATCATAAAGACGCAGCACAATCAGAGAAAGCAGAAGACGGCGAAGTTCATAGGGCAGTCTTCGAGGTAGAAGGTCAAAACCCGAAACAGCAACCCCCTGCCGACGCTGAAGAGGAGGCCGAAGGGGCAGTCGGAGAAGTAGATGATGATGATGCATCCATGGTTGAAGTGTCCTTGCATGATAACATGAAGGCAGAAGAGTTAGCCGCGTTACAAATGGAGATGGAGAGTATGAAGGAGGAAAATAATTGGTTGAAGAAGGTAATGGAGAAGACTATGAAAGACTATTATGATCTTCAAATGAAATTCTCAGTAATTCAGCAAAAAAGCCAAGAAAAGGATCTAAAACGAGTATTGTTTCTCCATGATGATCGGACCAAATTTGATGAGCCGAACACGATACTCAAAGCATCCATCGTTGACGGCCGGAAACCATTCTCTCCGTCAACCCAAGAGACCGACTTAGGCTTGACATTGAGCTTAAATTATGAAAGTTCAGGGAGAAAAGATGAAGATAAAGAACAGAAGAGAGAAGAAGTGATAAGTTCTATATCAATGGAGCAAAACAAACTTCAGATGAGGACTGAATTGCCTGGAATTTCGTCTCACGTTGCCTCCCATCCAAATAGAAAAGCTAGGGTTTCTGTTAGAGCTAGATGTGAAACAGCCACAATGAGCGATGGTTGTCAATGGAGAAAATACGGCCAGAAAATTGCAAAAGGAAACCCTTGCCCTCGAGCCTACTATCGCTGCACGGTGGCTCCGGGATGCCCCGTTAGGAAACAGGTGCAAAGATGCTTAGAAGACATGTCAATTTTAATAACAACGTATGAAGGGAATCATAATCATCCACTTCCGGTTGGTGCAACAGCCATGGCCTCAACAGCTTCCGCAGCTGCTTCATTTACCTTGTTGGACTCGAGCAATCTAATTCCAGAATCTTCTACCTTCAAATCATCTTCTCAACCTGCAAAACCCATCAACAACATCATTTCCAACGATCCATCTAAAGGCATTCTTCTTGATCTCACGAGAAACTTGTATGATTCCTCACATTTCCCACTTTCTAGTTCGTCGAATCCAATCTGGTTTCCAGGTTTAAGTTGGCAAGGCAAACCAAATTATCTTAATGGAAATTTCATGGGAACCAATCCTTTTCCTGGCTGTAAGAACGTGGGTGAACAGAACTTGAAAGGAGAAGGAAAACAATCATTGGACAACAACCTCAGGACTGCTATTGAGTCGGACCCGAAATTCCAAGCGGCTGTTGCGGCTGCAATAACTTCACTTATGAACAAAGAGAACAATTCAGCTCATCCGCTGATCGGAACTGGTTTTGGACTAAAGGATCAAGTGAGCGACGCCATGAACGACGGCAATTAG 1410 43.83 MEVDLSLNTDHKDAAQSEKAEDGEVHRAVFEVEGQNPKQQPPADAEEEAEGAVGEVDDDDASMVEVSLHDNMKAEELAALQMEMESMKEENNWLKKVMEKTMKDYYDLQMKFSVIQQKSQEKDLKRVLFLHDDRTKFDEPNTILKASIVDGRKPFSPSTQETDLGLTLSLNYESSGRKDEDKEQKREEVISSISMEQNKLQMRTELPGISSHVASHPNRKARVSVRARCETATMSDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCLEDMSILITTYEGNHNHPLPVGATAMASTASAAASFTLLDSSNLIPESSTFKSSSQPAKPINNIISNDPSKGILLDLTRNLYDSSHFPLSSSSNPIWFPGLSWQGKPNYLNGNFMGTNPFPGCKNVGEQNLKGEGKQSLDNNLRTAIESDPKFQAAVAAAITSLMNKENNSAHPLIGTGFGLKDQVSDAMNDGN 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18422954 18425096 + Bpe017820.1 Bpe05g00402 104179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00402 469 ProSiteProfiles WRKY domain profile. 229 295 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bpe05g00402 469 PANTHER WRKY TRANSCRIPTION FACTOR 9-RELATED 2 447 - -
Bpe05g00402 469 Coils Coil 77 97 - -
Bpe05g00402 469 MobiDBLite consensus disorder prediction 1 57 - -
Bpe05g00402 469 MobiDBLite consensus disorder prediction 1 31 - -
Bpe05g00402 469 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 2 447 IPR044810 GO:0003700
Bpe05g00402 469 SUPERFAMILY WRKY DNA-binding domain 227 295 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bpe05g00402 469 Gene3D WRKY domain 219 296 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bpe05g00402 469 Pfam WRKY DNA -binding domain 236 293 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bpe05g00402 469 SMART WRKY_cls 234 294 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00402 Bpe-Chr5:18422954 Bpe12g00555 Bpe-Chr12:11403395 1.12E-59 dispersed
Bpe05g00402 Bpe-Chr5:18422954 Bpe07g00352 Bpe-Chr7:2794043 2.13E-166 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21430 PF03106 WRKY 1.90E-24 CL0274 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00402 - - gmx:100820209 404.445