Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bpe05g00406 | ATGTCATTCCGTAGCCTTGTCCGAGATGTAAGGGATAGTATTGGGAGCTTATCCAGACGTGGATTTGAGGTCCGGCTGACTGGCCATAACCGAGAAAAATCGTACGGTTCTTGCCATGATTTGCATGATCAGCCTCTCGTGGTTCAGAGCAGCTGCTGGGCCAACCTTCCACCGGAGCTTCTCTATGACGTGATCAGGAGGCTGGAGGAGAGTGAAAGCACTTGGCCTTCGCGTAAGCATGTCATTGCTTGTGCTGCAGTTTGTCGTTCTTGGAGAAACATGTGCAAAGAATTAGTTAAAAATCCTGAAATTTGTGGGAAGCTTACCTTTCCTGTGTCTCTAAAGCAGCCAGGGCCACGTGACGGAACCATCCAGTGCTTCATTAAAAGGGATAAGTCGAATTTAACGTACCACCTCTATCTATGTCTTAGCCCTGGCAAGTATTTTTTTTCATATAAGTTATGCTTGTGTAATTTACCATCATTTTATGATATCGATCGTGTGACGGTAAATTATAAGACTATCCTGCGTTTGACTGCAGCTTTGCTGGTTGAAAATGGGAAATTCCTTCTTTCTGCAAAACGAACACGAAGAACGACTAGCACTGAGTACGTTATCTCAATGGATGCTGAGAACATCTCGAGATCAAGCAGCACCTATATCGGAAAATTAAGGTCAAATTTTCTCGGTACAAAGTTCATCATATTTGACACTCAACCTCCATACACGTCTGTTGCCATTCCTTTGCCCGGTAAAACAAGTCGAAGATTCTACTCTAAAAAGGTCTCCCCAAAAGTCCCAAGCGGAAGCTACAACATTGCCCAAATAAGCTATGAACTAAATGTGTTGGGCACTCGAGGCCCGCGAAGAATGCACTGTGTGATGCATTCGATCCCATTGGCGGCCCTCGATGTAGGTGGATTCGTCCCTGGACAGCCAGAGCTCCTTCCCCGCACGCTCGAAGACTCGTTCCGGAGCATCTCCTTCTCCAAGTCTTTTGATTATTCCATGGAGTTCAGCAGCTCTAGATTCTCTGAAATCGGTAGACGGGTCGACGGCGATGAGGAGGAAAAGACGGTTATACCCTTGGTGCTGAAAAACAAGCCGCCGAGATGGCACGAGCAATTGCAGTGCTGGTGCTTGAATTTCCGAGGGCGTGTGACAGTTGCTTCTGTGAAGAACTTTCAGTTGATTGCGGGGGCACAGCCGGTGGCCGGGGCTCCAGCGTCATCTCAGCCGACTCCTCCGGAGTACGATAAGATAATTCTTCAGTTTGGGAAGGTCGGTAAAGACATGTTTACGATGGATTACCGGTATCCATTATCGGCTTTTCAGGCTTTTGCCATTTGCTTGAGCAGCTTCGACACGAAATTGGCTTGTGAATAG | 1386 | 47.19 | MSFRSLVRDVRDSIGSLSRRGFEVRLTGHNREKSYGSCHDLHDQPLVVQSSCWANLPPELLYDVIRRLEESESTWPSRKHVIACAAVCRSWRNMCKELVKNPEICGKLTFPVSLKQPGPRDGTIQCFIKRDKSNLTYHLYLCLSPGKYFFSYKLCLCNLPSFYDIDRVTVNYKTILRLTAALLVENGKFLLSAKRTRRTTSTEYVISMDAENISRSSSTYIGKLRSNFLGTKFIIFDTQPPYTSVAIPLPGKTSRRFYSKKVSPKVPSGSYNIAQISYELNVLGTRGPRRMHCVMHSIPLAALDVGGFVPGQPELLPRTLEDSFRSISFSKSFDYSMEFSSSRFSEIGRRVDGDEEEKTVIPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAGAQPVAGAPASSQPTPPEYDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE | 461 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 18452789 | 18455403 | - | Bpe017824.2 | Bpe05g00406 | 104183 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bpe05g00406 | 461 | ProSitePatterns | Tub family signature 2. | 446 | 461 | IPR018066 | - | |
Bpe05g00406 | 461 | PANTHER | TUBBY-LIKE F-BOX PROTEIN 10-RELATED | 1 | 155 | - | - | |
Bpe05g00406 | 461 | PANTHER | TUBBY-LIKE F-BOX PROTEIN 10-RELATED | 162 | 461 | - | - | |
Bpe05g00406 | 461 | Gene3D | - | 48 | 101 | - | - | |
Bpe05g00406 | 461 | PRINTS | Tubby superfamily signature | 383 | 399 | IPR000007 | - | |
Bpe05g00406 | 461 | PRINTS | Tubby superfamily signature | 418 | 437 | IPR000007 | - | |
Bpe05g00406 | 461 | PRINTS | Tubby superfamily signature | 365 | 382 | IPR000007 | - | |
Bpe05g00406 | 461 | PRINTS | Tubby superfamily signature | 270 | 297 | IPR000007 | - | |
Bpe05g00406 | 461 | PRINTS | Tubby superfamily signature | 220 | 244 | IPR000007 | - | |
Bpe05g00406 | 461 | PRINTS | Tubby superfamily signature | 439 | 461 | IPR000007 | - | |
Bpe05g00406 | 461 | PRINTS | Tubby superfamily signature | 204 | 220 | IPR000007 | - | |
Bpe05g00406 | 461 | Pfam | F-box domain | 53 | 100 | IPR001810 | GO:0005515 | |
Bpe05g00406 | 461 | PANTHER | TUBBY-RELATED | 162 | 461 | - | - | |
Bpe05g00406 | 461 | SUPERFAMILY | F-box domain | 48 | 96 | IPR036047 | GO:0005515 | |
Bpe05g00406 | 461 | ProSitePatterns | Tub family signature 1. | 383 | 396 | IPR018066 | - | |
Bpe05g00406 | 461 | SUPERFAMILY | Tubby C-terminal domain-like | 102 | 145 | IPR025659 | - | |
Bpe05g00406 | 461 | Pfam | Tub family | 169 | 456 | IPR000007 | - | |
Bpe05g00406 | 461 | Pfam | Tub family | 114 | 146 | IPR000007 | - | |
Bpe05g00406 | 461 | PANTHER | TUBBY-RELATED | 1 | 155 | - | - | |
Bpe05g00406 | 461 | SUPERFAMILY | Tubby C-terminal domain-like | 166 | 461 | IPR025659 | - | |
Bpe05g00406 | 461 | Gene3D | Tubby Protein; Chain A | 110 | 152 | IPR025659 | - | |
Bpe05g00406 | 461 | Gene3D | Tubby Protein; Chain A | 162 | 461 | IPR025659 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bpe02g00213 | Bpe-Chr2:1479145 | Bpe05g00406 | Bpe-Chr5:18452789 | 0 | dispersed | |
Bpe04g00353 | Bpe-Chr4:2239597 | Bpe05g00406 | Bpe-Chr5:18452789 | 0 | dispersed | |
Bpe05g00406 | Bpe-Chr5:18452789 | Bpe05g00852 | Bpe-Chr5:21724757 | 9.79E-137 | dispersed | |
Bpe05g00406 | Bpe-Chr5:18452789 | Bpe07g00349 | Bpe-Chr7:2736000 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
21432 | PF01167 | Tub | 5.30E-102 | CL0395 | Bpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bpe05g00406 | K19600 | - | jre:109007061 | 730.324 |