Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00406 ATGTCATTCCGTAGCCTTGTCCGAGATGTAAGGGATAGTATTGGGAGCTTATCCAGACGTGGATTTGAGGTCCGGCTGACTGGCCATAACCGAGAAAAATCGTACGGTTCTTGCCATGATTTGCATGATCAGCCTCTCGTGGTTCAGAGCAGCTGCTGGGCCAACCTTCCACCGGAGCTTCTCTATGACGTGATCAGGAGGCTGGAGGAGAGTGAAAGCACTTGGCCTTCGCGTAAGCATGTCATTGCTTGTGCTGCAGTTTGTCGTTCTTGGAGAAACATGTGCAAAGAATTAGTTAAAAATCCTGAAATTTGTGGGAAGCTTACCTTTCCTGTGTCTCTAAAGCAGCCAGGGCCACGTGACGGAACCATCCAGTGCTTCATTAAAAGGGATAAGTCGAATTTAACGTACCACCTCTATCTATGTCTTAGCCCTGGCAAGTATTTTTTTTCATATAAGTTATGCTTGTGTAATTTACCATCATTTTATGATATCGATCGTGTGACGGTAAATTATAAGACTATCCTGCGTTTGACTGCAGCTTTGCTGGTTGAAAATGGGAAATTCCTTCTTTCTGCAAAACGAACACGAAGAACGACTAGCACTGAGTACGTTATCTCAATGGATGCTGAGAACATCTCGAGATCAAGCAGCACCTATATCGGAAAATTAAGGTCAAATTTTCTCGGTACAAAGTTCATCATATTTGACACTCAACCTCCATACACGTCTGTTGCCATTCCTTTGCCCGGTAAAACAAGTCGAAGATTCTACTCTAAAAAGGTCTCCCCAAAAGTCCCAAGCGGAAGCTACAACATTGCCCAAATAAGCTATGAACTAAATGTGTTGGGCACTCGAGGCCCGCGAAGAATGCACTGTGTGATGCATTCGATCCCATTGGCGGCCCTCGATGTAGGTGGATTCGTCCCTGGACAGCCAGAGCTCCTTCCCCGCACGCTCGAAGACTCGTTCCGGAGCATCTCCTTCTCCAAGTCTTTTGATTATTCCATGGAGTTCAGCAGCTCTAGATTCTCTGAAATCGGTAGACGGGTCGACGGCGATGAGGAGGAAAAGACGGTTATACCCTTGGTGCTGAAAAACAAGCCGCCGAGATGGCACGAGCAATTGCAGTGCTGGTGCTTGAATTTCCGAGGGCGTGTGACAGTTGCTTCTGTGAAGAACTTTCAGTTGATTGCGGGGGCACAGCCGGTGGCCGGGGCTCCAGCGTCATCTCAGCCGACTCCTCCGGAGTACGATAAGATAATTCTTCAGTTTGGGAAGGTCGGTAAAGACATGTTTACGATGGATTACCGGTATCCATTATCGGCTTTTCAGGCTTTTGCCATTTGCTTGAGCAGCTTCGACACGAAATTGGCTTGTGAATAG 1386 47.19 MSFRSLVRDVRDSIGSLSRRGFEVRLTGHNREKSYGSCHDLHDQPLVVQSSCWANLPPELLYDVIRRLEESESTWPSRKHVIACAAVCRSWRNMCKELVKNPEICGKLTFPVSLKQPGPRDGTIQCFIKRDKSNLTYHLYLCLSPGKYFFSYKLCLCNLPSFYDIDRVTVNYKTILRLTAALLVENGKFLLSAKRTRRTTSTEYVISMDAENISRSSSTYIGKLRSNFLGTKFIIFDTQPPYTSVAIPLPGKTSRRFYSKKVSPKVPSGSYNIAQISYELNVLGTRGPRRMHCVMHSIPLAALDVGGFVPGQPELLPRTLEDSFRSISFSKSFDYSMEFSSSRFSEIGRRVDGDEEEKTVIPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAGAQPVAGAPASSQPTPPEYDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18452789 18455403 - Bpe017824.2 Bpe05g00406 104183

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00406 461 ProSitePatterns Tub family signature 2. 446 461 IPR018066 -
Bpe05g00406 461 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 155 - -
Bpe05g00406 461 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 162 461 - -
Bpe05g00406 461 Gene3D - 48 101 - -
Bpe05g00406 461 PRINTS Tubby superfamily signature 383 399 IPR000007 -
Bpe05g00406 461 PRINTS Tubby superfamily signature 418 437 IPR000007 -
Bpe05g00406 461 PRINTS Tubby superfamily signature 365 382 IPR000007 -
Bpe05g00406 461 PRINTS Tubby superfamily signature 270 297 IPR000007 -
Bpe05g00406 461 PRINTS Tubby superfamily signature 220 244 IPR000007 -
Bpe05g00406 461 PRINTS Tubby superfamily signature 439 461 IPR000007 -
Bpe05g00406 461 PRINTS Tubby superfamily signature 204 220 IPR000007 -
Bpe05g00406 461 Pfam F-box domain 53 100 IPR001810 GO:0005515
Bpe05g00406 461 PANTHER TUBBY-RELATED 162 461 - -
Bpe05g00406 461 SUPERFAMILY F-box domain 48 96 IPR036047 GO:0005515
Bpe05g00406 461 ProSitePatterns Tub family signature 1. 383 396 IPR018066 -
Bpe05g00406 461 SUPERFAMILY Tubby C-terminal domain-like 102 145 IPR025659 -
Bpe05g00406 461 Pfam Tub family 169 456 IPR000007 -
Bpe05g00406 461 Pfam Tub family 114 146 IPR000007 -
Bpe05g00406 461 PANTHER TUBBY-RELATED 1 155 - -
Bpe05g00406 461 SUPERFAMILY Tubby C-terminal domain-like 166 461 IPR025659 -
Bpe05g00406 461 Gene3D Tubby Protein; Chain A 110 152 IPR025659 -
Bpe05g00406 461 Gene3D Tubby Protein; Chain A 162 461 IPR025659 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00406 K19600 TUB, TULP; tubby and related proteins - jre:109007061 730.324
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00213 Bpe-Chr2:1479145 Bpe05g00406 Bpe-Chr5:18452789 0 dispersed
Bpe04g00353 Bpe-Chr4:2239597 Bpe05g00406 Bpe-Chr5:18452789 0 dispersed
Bpe05g00406 Bpe-Chr5:18452789 Bpe05g00852 Bpe-Chr5:21724757 9.79E-137 dispersed
Bpe05g00406 Bpe-Chr5:18452789 Bpe07g00349 Bpe-Chr7:2736000 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe05g00406 . 1 461 TUB Transcription Factor Family AT1G76900 65.4 4.3e-168 587.8
Bpe02g00213 BCT 1 424 TUB Transcription Factor Family AT1G76900 69.2 6.2e-167 583.9
Bpe07g00349 . 1 432 TUB Transcription Factor Family AT1G76900 67.5 7.6e-165 577.0
Bpe04g00353 BCT 1 443 TUB Transcription Factor Family AT1G76900 65.7 3.8e-164 574.7
Bpe12g00743 . 5 376 TUB Transcription Factor Family AT1G76900 54.8 3.7e-119 425.2
Bpe04g00217 BCT 1 414 TUB Transcription Factor Family AT1G76900 50.3 3.4e-117 418.7
Bpe05g00406 . 208 461 TUB Transcription Factor Family AT1G25280 72.3 3.8e-100 361.3
Bpe07g00349 . 179 432 TUB Transcription Factor Family AT1G25280 72.7 6.5e-100 360.5
Bpe04g00353 BCT 193 443 TUB Transcription Factor Family AT1G25280 64.8 1.1e-91 333.2
Bpe02g00213 BCT 173 424 TUB Transcription Factor Family AT1G25280 68.4 1.5e-91 332.8
Bpe12g00743 . 138 376 TUB Transcription Factor Family AT1G25280 67.5 1.3e-84 309.7
Bpe04g01142 . 156 387 TUB Transcription Factor Family AT1G25280 53.6 6.4e-71 264.2
Bpe04g00217 BCT 177 414 TUB Transcription Factor Family AT1G25280 54.7 2.5e-67 252.3
Bpe02g00385 BCT 160 392 TUB Transcription Factor Family AT1G25280 53.5 5.8e-64 241.1
Bpe04g01142 . 98 387 TUB Transcription Factor Family AT5G18680 62.8 1.2e-97 353.2
Bpe05g00852 . 98 403 TUB Transcription Factor Family AT5G18680 58.8 6.0e-94 340.9
Bpe02g00213 BCT 112 424 TUB Transcription Factor Family AT5G18680 50.8 1.2e-81 300.1
Bpe07g00349 . 111 432 TUB Transcription Factor Family AT5G18680 51.2 9.9e-81 297.0
Bpe04g00217 BCT 114 414 TUB Transcription Factor Family AT5G18680 51.5 6.0e-78 287.7
Bpe12g00743 . 142 376 TUB Transcription Factor Family AT5G18680 52.3 1.4e-58 223.4
Bpe04g00217 BCT 1 414 TUB Transcription Factor Family AT2G18280 56.9 2.8e-123 438.7
Bpe02g00213 BCT 1 424 TUB Transcription Factor Family AT2G18280 52.9 5.1e-117 417.9
Bpe07g00349 . 1 432 TUB Transcription Factor Family AT2G18280 51.3 2.8e-115 412.1
Bpe04g00353 BCT 1 443 TUB Transcription Factor Family AT2G18280 50.4 4.8e-115 411.4
Bpe05g00852 . 1 403 TUB Transcription Factor Family AT2G18280 52.0 2.2e-112 402.5
Bpe04g01142 . 1 387 TUB Transcription Factor Family AT2G18280 52.6 3.8e-112 401.7
Bpe02g00385 BCT 1 392 TUB Transcription Factor Family AT2G18280 51.4 3.3e-100 362.1
Bpe04g01142 . 1 387 TUB Transcription Factor Family AT2G47900 68.2 7.7e-161 563.5
Bpe05g00852 . 1 403 TUB Transcription Factor Family AT2G47900 64.9 1.3e-155 546.2
Bpe04g00353 BCT 1 443 TUB Transcription Factor Family AT2G47900 54.6 2.0e-132 469.2
Bpe07g00349 . 1 432 TUB Transcription Factor Family AT2G47900 55.2 2.9e-131 465.3
Bpe02g00213 BCT 1 424 TUB Transcription Factor Family AT2G47900 56.0 9.2e-130 460.3
Bpe05g00406 . 1 461 TUB Transcription Factor Family AT2G47900 52.1 7.3e-127 450.7
Bpe04g00217 BCT 1 414 TUB Transcription Factor Family AT2G47900 52.7 9.0e-117 417.2
Bpe10g00587 . 80 298 TUB Transcription Factor Family AT1G16070 59.6 7.0e-71 264.2
Bpe02g00213 BCT 65 424 TUB Transcription Factor Family AT1G43640 69.1 8.2e-146 513.5
Bpe07g00349 . 64 432 TUB Transcription Factor Family AT1G43640 66.4 5.0e-143 504.2
Bpe05g00406 . 65 461 TUB Transcription Factor Family AT1G43640 62.8 4.4e-139 491.1
Bpe04g00353 BCT 65 443 TUB Transcription Factor Family AT1G43640 62.0 3.7e-138 488.0
Bpe04g01142 . 47 387 TUB Transcription Factor Family AT1G43640 51.6 7.8e-104 374.0
Bpe05g00852 . 47 403 TUB Transcription Factor Family AT1G43640 50.3 5.2e-100 361.3
Bpe04g00217 BCT 67 414 TUB Transcription Factor Family AT1G43640 51.2 3.2e-97 352.1
Bpe12g00743 . 71 376 TUB Transcription Factor Family AT1G43640 53.1 2.0e-96 349.4
Bpe04g00217 BCT 1 414 TUB Transcription Factor Family AT1G47270 61.3 5.9e-134 474.2
Bpe02g00213 BCT 48 424 TUB Transcription Factor Family AT1G47270 57.5 1.1e-116 416.8
Bpe02g00385 BCT 31 392 TUB Transcription Factor Family AT1G47270 57.5 1.2e-113 406.8
Bpe07g00349 . 1 432 TUB Transcription Factor Family AT1G47270 50.9 5.4e-111 397.9
Bpe05g00406 . 48 461 TUB Transcription Factor Family AT1G47270 50.7 4.7e-107 384.8
Bpe04g01142 . 1 387 TUB Transcription Factor Family AT1G47270 50.6 8.9e-106 380.6
Bpe09g00261 . 1 377 TUB Transcription Factor Family AT1G53320 68.3 7.7e-147 516.9
Bpe04g01142 . 98 387 TUB Transcription Factor Family AT3G06380 63.8 6.2e-96 347.4
Bpe05g00852 . 98 403 TUB Transcription Factor Family AT3G06380 59.3 4.1e-92 334.7
Bpe02g00213 BCT 116 424 TUB Transcription Factor Family AT3G06380 51.9 1.8e-79 292.7
Bpe04g00217 BCT 118 414 TUB Transcription Factor Family AT3G06380 53.0 7.6e-78 287.3
Bpe12g00743 . 138 376 TUB Transcription Factor Family AT3G06380 52.1 2.4e-55 212.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000394 5 6 5 8 5 3 5 3 3 3 3 3 5 3 3 5 3 6 5 3 3 3 2 3 3 3 3 14 4 2 125
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21432 PF01167 Tub 5.30E-102 CL0395 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00406 Bpe_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0