Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00406 ATGTCATTCCGTAGCCTTGTCCGAGATGTAAGGGATAGTATTGGGAGCTTATCCAGACGTGGATTTGAGGTCCGGCTGACTGGCCATAACCGAGAAAAATCGTACGGTTCTTGCCATGATTTGCATGATCAGCCTCTCGTGGTTCAGAGCAGCTGCTGGGCCAACCTTCCACCGGAGCTTCTCTATGACGTGATCAGGAGGCTGGAGGAGAGTGAAAGCACTTGGCCTTCGCGTAAGCATGTCATTGCTTGTGCTGCAGTTTGTCGTTCTTGGAGAAACATGTGCAAAGAATTAGTTAAAAATCCTGAAATTTGTGGGAAGCTTACCTTTCCTGTGTCTCTAAAGCAGCCAGGGCCACGTGACGGAACCATCCAGTGCTTCATTAAAAGGGATAAGTCGAATTTAACGTACCACCTCTATCTATGTCTTAGCCCTGGCAAGTATTTTTTTTCATATAAGTTATGCTTGTGTAATTTACCATCATTTTATGATATCGATCGTGTGACGGTAAATTATAAGACTATCCTGCGTTTGACTGCAGCTTTGCTGGTTGAAAATGGGAAATTCCTTCTTTCTGCAAAACGAACACGAAGAACGACTAGCACTGAGTACGTTATCTCAATGGATGCTGAGAACATCTCGAGATCAAGCAGCACCTATATCGGAAAATTAAGGTCAAATTTTCTCGGTACAAAGTTCATCATATTTGACACTCAACCTCCATACACGTCTGTTGCCATTCCTTTGCCCGGTAAAACAAGTCGAAGATTCTACTCTAAAAAGGTCTCCCCAAAAGTCCCAAGCGGAAGCTACAACATTGCCCAAATAAGCTATGAACTAAATGTGTTGGGCACTCGAGGCCCGCGAAGAATGCACTGTGTGATGCATTCGATCCCATTGGCGGCCCTCGATGTAGGTGGATTCGTCCCTGGACAGCCAGAGCTCCTTCCCCGCACGCTCGAAGACTCGTTCCGGAGCATCTCCTTCTCCAAGTCTTTTGATTATTCCATGGAGTTCAGCAGCTCTAGATTCTCTGAAATCGGTAGACGGGTCGACGGCGATGAGGAGGAAAAGACGGTTATACCCTTGGTGCTGAAAAACAAGCCGCCGAGATGGCACGAGCAATTGCAGTGCTGGTGCTTGAATTTCCGAGGGCGTGTGACAGTTGCTTCTGTGAAGAACTTTCAGTTGATTGCGGGGGCACAGCCGGTGGCCGGGGCTCCAGCGTCATCTCAGCCGACTCCTCCGGAGTACGATAAGATAATTCTTCAGTTTGGGAAGGTCGGTAAAGACATGTTTACGATGGATTACCGGTATCCATTATCGGCTTTTCAGGCTTTTGCCATTTGCTTGAGCAGCTTCGACACGAAATTGGCTTGTGAATAG 1386 47.19 MSFRSLVRDVRDSIGSLSRRGFEVRLTGHNREKSYGSCHDLHDQPLVVQSSCWANLPPELLYDVIRRLEESESTWPSRKHVIACAAVCRSWRNMCKELVKNPEICGKLTFPVSLKQPGPRDGTIQCFIKRDKSNLTYHLYLCLSPGKYFFSYKLCLCNLPSFYDIDRVTVNYKTILRLTAALLVENGKFLLSAKRTRRTTSTEYVISMDAENISRSSSTYIGKLRSNFLGTKFIIFDTQPPYTSVAIPLPGKTSRRFYSKKVSPKVPSGSYNIAQISYELNVLGTRGPRRMHCVMHSIPLAALDVGGFVPGQPELLPRTLEDSFRSISFSKSFDYSMEFSSSRFSEIGRRVDGDEEEKTVIPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAGAQPVAGAPASSQPTPPEYDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18452789 18455403 - Bpe017824.2 Bpe05g00406 104183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00406 461 ProSitePatterns Tub family signature 2. 446 461 IPR018066 -
Bpe05g00406 461 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 155 - -
Bpe05g00406 461 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 162 461 - -
Bpe05g00406 461 Gene3D - 48 101 - -
Bpe05g00406 461 PRINTS Tubby superfamily signature 383 399 IPR000007 -
Bpe05g00406 461 PRINTS Tubby superfamily signature 418 437 IPR000007 -
Bpe05g00406 461 PRINTS Tubby superfamily signature 365 382 IPR000007 -
Bpe05g00406 461 PRINTS Tubby superfamily signature 270 297 IPR000007 -
Bpe05g00406 461 PRINTS Tubby superfamily signature 220 244 IPR000007 -
Bpe05g00406 461 PRINTS Tubby superfamily signature 439 461 IPR000007 -
Bpe05g00406 461 PRINTS Tubby superfamily signature 204 220 IPR000007 -
Bpe05g00406 461 Pfam F-box domain 53 100 IPR001810 GO:0005515
Bpe05g00406 461 PANTHER TUBBY-RELATED 162 461 - -
Bpe05g00406 461 SUPERFAMILY F-box domain 48 96 IPR036047 GO:0005515
Bpe05g00406 461 ProSitePatterns Tub family signature 1. 383 396 IPR018066 -
Bpe05g00406 461 SUPERFAMILY Tubby C-terminal domain-like 102 145 IPR025659 -
Bpe05g00406 461 Pfam Tub family 169 456 IPR000007 -
Bpe05g00406 461 Pfam Tub family 114 146 IPR000007 -
Bpe05g00406 461 PANTHER TUBBY-RELATED 1 155 - -
Bpe05g00406 461 SUPERFAMILY Tubby C-terminal domain-like 166 461 IPR025659 -
Bpe05g00406 461 Gene3D Tubby Protein; Chain A 110 152 IPR025659 -
Bpe05g00406 461 Gene3D Tubby Protein; Chain A 162 461 IPR025659 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00213 Bpe-Chr2:1479145 Bpe05g00406 Bpe-Chr5:18452789 0 dispersed
Bpe04g00353 Bpe-Chr4:2239597 Bpe05g00406 Bpe-Chr5:18452789 0 dispersed
Bpe05g00406 Bpe-Chr5:18452789 Bpe05g00852 Bpe-Chr5:21724757 9.79E-137 dispersed
Bpe05g00406 Bpe-Chr5:18452789 Bpe07g00349 Bpe-Chr7:2736000 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21432 PF01167 Tub 5.30E-102 CL0395 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00406 K19600 - jre:109007061 730.324