Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00432 ATGGATAAAGTTGAAACTGAAAAAGGGGACGAATTGTTTGAGGATTTGAAACATCGATTTCAAAGCTTTAAGCGGCAAAATTACATGGAAAATATAGAACACTTCCAAAATCTTTCGAAGGCTCAAGCACCAAAGTTTATGGTTGTTGCTTGTGCAGACTCCAGAGTCTGTCCCTCTAACATCTTGGGATTTCAGCCTGGAGAATCATTTACGATACGAAATGTAGCCAATCTGGTGCCACCATTTGAGAAGGGACCATGGGAAACAAATGCTGCATTAGAATTTGCTGTGAACTCTCTTAAAATTCTATACAGCATTGGCAAATTATTATACCTGTGCATTTTTGCTAAAATTCATTGTAATCAACCAGAAAACCTTACTTTACAGTCTGGAATCAAACCATCTGAAAATAAAAAATGGATAACTCGTTTGCAGGTTGAAAATATTTTAGTCATCGGGCATAGCTGCTGTGGTGGCATTCGTGCCCTTATGAGCATGCCAGATGTGCACGACGAAGTAGATTCAAGTAGTTTTATCAGAAGCTGGGTTGTGATAGGGAAGAATGCCCGATTAAGCACAAAATCTGCTGCTTCGAGCCTTGACTTTGACCAGCAGTGCAGGCACTGTGAAAAGGAATCAGTAAACAAATCATTGTTAAACCTGCTTACATATCCATGGATAGAAGAGAAGGTGAAGAAAGGAGTTCTCTCCATCCATGGCGGGTACTATGACTTTGTCAACTGTACATTCGAGAAATGGACACTTGATTTTAAAGCTACCAGCTTTGTGGAGGAGACGCCAAAGTTGGGAGTAATAGACAAGCAGTTCTGGTCCTGA 837 40.38 MDKVETEKGDELFEDLKHRFQSFKRQNYMENIEHFQNLSKAQAPKFMVVACADSRVCPSNILGFQPGESFTIRNVANLVPPFEKGPWETNAALEFAVNSLKILYSIGKLLYLCIFAKIHCNQPENLTLQSGIKPSENKKWITRLQVENILVIGHSCCGGIRALMSMPDVHDEVDSSSFIRSWVVIGKNARLSTKSAASSLDFDQQCRHCEKESVNKSLLNLLTYPWIEEKVKKGVLSIHGGYYDFVNCTFEKWTLDFKATSFVEETPKLGVIDKQFWS 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18764785 18766463 - Bpe017851.1 Bpe05g00432 104209

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00432 278 Pfam Carbonic anhydrase 47 102 IPR001765 GO:0004089|GO:0008270
Bpe05g00432 278 Pfam Carbonic anhydrase 141 246 IPR001765 GO:0004089|GO:0008270
Bpe05g00432 278 SUPERFAMILY beta-carbonic anhydrase, cab 142 261 IPR036874 GO:0004089|GO:0008270
Bpe05g00432 278 PANTHER CARBONIC ANHYDRASE 142 278 - -
Bpe05g00432 278 PANTHER CARBONIC ANHYDRASE 4 102 - -
Bpe05g00432 278 PANTHER CARBONIC ANHYDRASE 4 102 IPR001765 GO:0004089|GO:0008270
Bpe05g00432 278 ProSitePatterns Prokaryotic-type carbonic anhydrases signature 1. 51 58 IPR015892 GO:0004089|GO:0008270|GO:0015976
Bpe05g00432 278 SMART Pro_CA_2 39 254 IPR001765 GO:0004089|GO:0008270
Bpe05g00432 278 CDD beta_CA_cladeB 19 253 IPR045066 GO:0004089|GO:0008270
Bpe05g00432 278 Gene3D Carbonic anhydrase 3 264 IPR036874 GO:0004089|GO:0008270
Bpe05g00432 278 PANTHER CARBONIC ANHYDRASE 142 278 IPR001765 GO:0004089|GO:0008270
Bpe05g00432 278 SUPERFAMILY beta-carbonic anhydrase, cab 10 102 IPR036874 GO:0004089|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00432 K01673 cynT, can; carbonic anhydrase [EC:4.2.1.1] - fve:101309786 342.428
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g01152 Bpe05g00432 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01152 Bpe-Chr2:15121187 Bpe05g00432 Bpe-Chr5:18764785 1.34E-68 dispersed
Bpe05g00432 Bpe-Chr5:18764785 Bpe13g01462 Bpe-Chr13:19908098 8.44E-53 dispersed
Bpe05g00432 Bpe-Chr5:18764785 Bpe13g00496 Bpe-Chr13:12370981 1.01E-55 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g503 . . Bda01g00913 . . . . . . Cmo12g00150 . . . Car12g00178 . . Cpe07g00166 Bhi04g00925 . . . . . . . . . . . . . . . . . . . . . . Blo18g00104 . . Bpe02g01152 Bpe05g00432 Bma01g00979 . . . . Cma12g00197 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001553 2 9 2 1 2 2 2 2 2 1 2 2 2 2 2 2 2 4 3 2 2 2 3 2 1 2 3 4 2 2 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00432 Bpe_Chr05 FPKM 52.734867 54.969048 23.341364 23.845726 0.354857 0.0 0.22522 5.249126 4.976642 4.577127