Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00445 ATGGCGTCCGCCGTCTTAGCTGACAGGAACGGTTCTAATTGCATCCAGCACACAGGCGGGGTTGGTGTACTGGGCGGAGGTGGTGTACTGATGGGAAAAGTTCCCTTCTCTAATCCTAACCCTAGTTATAACAAGAGGAAATTTCACGGAGAGACGAACGGATTTCCGATGGATGAGTCTCCAGCCGTGACTCAGTCGGTTTCGGATGATGAATCTTCGATTAATCATCGTCTTAAATCTTCAAACCCAATTGAGTACAACGTGTATGAAACCTTTAATATTTCGTCCTACAACGGGAAGGAACTCATGGACCTGGAGCATCGATTAACCAGGGAGCTCGAACAGGTTCGACAAATGAAAAATCGTCTTAACTCCAGCAACTTCAATCAGAGGACAACTCATTCAAAAAAACCATCGAAGATGTCTGGTAATAAGCGACCATTATCTTCGTCAAGCTTCGGGAAAGATTCAAAGCGCTTGAATTCTGAACTTGGGAATATAATGAAGTCGTGCTCGCAGATATTGACGAAATTAATGAAACACAAGCACGGTTGGATCTTTAACAAGCCCGTTGATGTAATCGGAATGGGCCTCCACGATTACTACGATATTATTAAACGGCCTATGGATTTAGGTTCCGTTAAATCCAAGTTGAGCAAGAATCTGTACGCTTCACCGATGGATTTCGCTGCTGATGTTAAATTAATTTTCAACAATGCAATGGCTTACAATCCAAGGGGTCATGATGTTTACATAATGGCGGAGATCCTGCTGGCAAGGTTTGAGGAATTATTTCGTCCTTTTAGCATCACATTGGAGGATGAAAGGAACTTGGAGGATGAGATGAACGAGCATCGAGTCTACGATGAGGAAGTGCAAGCTAGTTCTTGGAATCATTTGGGGACGGATAGCACGGAGAGGGAGCCTAATCAAAGTTCGAGAAAATATGACCAATCGAAGGGGCCAGCTAGCACTTCGAATCTGCCTCAACCTCCATTGGTGCAGTCGCCTGTCAAAACCCCTTCGCCCGTGAGGGTACCTCCGGTGAAGCCCTTGAAGCAGCCTAAGCCTAAGGCCAAGGACCCAAATAAGAGAGAAATGAGTTTGGAGGAGAAGCACAAATTGGGAATTGGATTGCAGAGTTTGCCACCAGAGAAAATGGAGCAAGTGGTGCACATTATAAATAAGAGGAACGGGCATTTGAAGCAAGAAGGGGATGAGATTGAGCTCGATATTGAGGCTGTCGATACAGAGACACTTTGGGAACTCGATCGACTGGTGACAAATTGGAAGAAGATGGTGAGCAAGATCAAACGACAAGCACTCCTGAGTAGCAATACAAATGCATCTTCCGCTCTCCTGAGTAACAACACGAATGCATCTTCCAACAAAACTAATGGGGCTTTGCCCGTGATTGAGAGAATGGAGGTTGCTTCCGAGGCCATAAAGCCAAGGAAAGGAGAAACTGGTGAGGAAGATGTTGACATTGGCGATGAGATGCCTATGAGCACCTTCCCACCCGTTGAGATTGAGAAAGATGCAGGAGTTCATGCCAGTAGCAGTTCTAGCAGCTCCAGTAGTTCGAGTAGCGATGATTCTTCTTCATCCAGTGATTCGGACTCTGAAGGAAGTTCGTCAGGGAGTGACTCTGATGATAATAAAGCACAGTCTTAG 1674 45.58 MASAVLADRNGSNCIQHTGGVGVLGGGGVLMGKVPFSNPNPSYNKRKFHGETNGFPMDESPAVTQSVSDDESSINHRLKSSNPIEYNVYETFNISSYNGKELMDLEHRLTRELEQVRQMKNRLNSSNFNQRTTHSKKPSKMSGNKRPLSSSSFGKDSKRLNSELGNIMKSCSQILTKLMKHKHGWIFNKPVDVIGMGLHDYYDIIKRPMDLGSVKSKLSKNLYASPMDFAADVKLIFNNAMAYNPRGHDVYIMAEILLARFEELFRPFSITLEDERNLEDEMNEHRVYDEEVQASSWNHLGTDSTEREPNQSSRKYDQSKGPASTSNLPQPPLVQSPVKTPSPVRVPPVKPLKQPKPKAKDPNKREMSLEEKHKLGIGLQSLPPEKMEQVVHIINKRNGHLKQEGDEIELDIEAVDTETLWELDRLVTNWKKMVSKIKRQALLSSNTNASSALLSNNTNASSNKTNGALPVIERMEVASEAIKPRKGETGEEDVDIGDEMPMSTFPPVEIEKDAGVHASSSSSSSSSSSSDDSSSSSDSDSEGSSSGSDSDDNKAQS 557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18844240 18846100 - Bpe017864.1 Bpe05g00445 104222

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00445 557 MobiDBLite consensus disorder prediction 293 368 - -
Bpe05g00445 557 MobiDBLite consensus disorder prediction 354 368 - -
Bpe05g00445 557 MobiDBLite consensus disorder prediction 334 353 - -
Bpe05g00445 557 ProSiteProfiles Bromodomain profile. 179 251 IPR001487 GO:0005515
Bpe05g00445 557 ProSitePatterns Bromodomain signature. 184 243 IPR018359 -
Bpe05g00445 557 Gene3D - 360 436 IPR038336 -
Bpe05g00445 557 PANTHER TRANSCRIPTION FACTOR GTE2 67 557 - -
Bpe05g00445 557 MobiDBLite consensus disorder prediction 478 492 - -
Bpe05g00445 557 Pfam Bromodomain 171 255 IPR001487 GO:0005515
Bpe05g00445 557 Gene3D - 117 286 IPR036427 GO:0005515
Bpe05g00445 557 MobiDBLite consensus disorder prediction 452 468 - -
Bpe05g00445 557 MobiDBLite consensus disorder prediction 121 156 - -
Bpe05g00445 557 ProSiteProfiles NET domain profile. 357 438 IPR027353 -
Bpe05g00445 557 Coils Coil 102 126 - -
Bpe05g00445 557 PANTHER OSJNBA0053K19.4 PROTEIN 67 557 - -
Bpe05g00445 557 SUPERFAMILY Bromodomain 151 267 IPR036427 GO:0005515
Bpe05g00445 557 MobiDBLite consensus disorder prediction 516 557 - -
Bpe05g00445 557 Pfam Bromodomain extra-terminal - transcription regulation 366 428 IPR027353 -
Bpe05g00445 557 SMART bromo_6 160 270 IPR001487 GO:0005515
Bpe05g00445 557 MobiDBLite consensus disorder prediction 315 333 - -
Bpe05g00445 557 MobiDBLite consensus disorder prediction 452 557 - -
Bpe05g00445 557 PRINTS Bromodomain signature 198 214 IPR001487 GO:0005515
Bpe05g00445 557 PRINTS Bromodomain signature 232 251 IPR001487 GO:0005515
Bpe05g00445 557 PRINTS Bromodomain signature 182 195 IPR001487 GO:0005515
Bpe05g00445 557 PRINTS Bromodomain signature 214 232 IPR001487 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00445 - - - csv:101216341 622.083
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00680 Bpe-Chr2:4596093 Bpe05g00445 Bpe-Chr5:18844240 2.74E-34 dispersed
Bpe05g00445 Bpe-Chr5:18844240 Bpe14g00628 Bpe-Chr14:5166687 1.59E-59 dispersed
Bpe05g00445 Bpe-Chr5:18844240 Bpe07g00531 Bpe-Chr7:11372532 5.27E-69 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g868 . . . . . . Bma05g00620 . . Cmo11g01450 . . . . Sed08g2798 Cpe04g00359 . Bhi05g00968 Tan02g1117 Cmetu01g2617 Lac12g0105 Hepe02g0695 . . Cla10g00935 Cam10g0956 Cec10g0994 Cco10g0953 Clacu10g0981 Cmu10g1766 Cre10g1139 . Cone9ag1431 . . . Csa07g00643 . Cme01g00160 . Blo13g00200 Bda15g00483 . . Bpe05g00445 . Bma08g00032 . . . Cma11g01678 . Car11g01166 . . . . . . . . . . Cla09g01617 Cam09g1535 Cec09g1779 Cco09g1862 . . Cre01g0782 . . Chy01g00168 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001096 3 2 3 3 1 2 4 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 8 5 1 80
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00445 Bpe_Chr05 FPKM 0.772832 0.778702 5.162005 5.500744 16.989668 18.070795 17.011108 4.202036 4.671133 4.168888