Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00456 ATGGCGGTGAGAGACCATCACTACCAAAACCATGCGAAGAGGATCCCTCTCTTCCCATTTCTCTCTCTTCTCTGTTTCTCCTCCTTCTTTTTCATTCTCTCTCTCTTGCGCAAGTCCTCCGTCTCTCCACAATCTCAGCAGAGCTTCCATTTTGGAGATGATAATAGGGGCCGCGAACAGGGCAACCTCCCTGTCGGACGTTGCGACTACTCCGAAGGGACTTGGATTTATGACCAGAATGTGAGATCTGCTAGGTATGATGGTTCGTGCAAGGAGATATTCAAGGGCTGGAATTGTGTTGCTGCGAATAAATCCAATGCTTTAGATCTCATCAAGTGGCGATGGAAACCTTGGCAGTGTGATCTTCCCTCTTTTGGTCCCTTGAGTTTTATGGAGAAATATAGGGACGTTAGCATCGGATTTGTTGGTGATTCCCTTAATAGGAATATGTTTGTATCGCTCTTCTGCTCTCTTAAACATGTGTCAAGTGATGTGAAGAAGTGGCGCCCTGCTGGTGCCGATCGTGGATATACATTTCTCAAGTATAATCTTACAATTTCATATCATCGAACTAATCTCTTAGCAAGATATGGTAGGTGGTCAGCTAATGCACATGGTGGGAAATTGGAATCTATTGGATTCAAGGAAGGCTTTAGGGTTGATGTTGACATCCCAGAAGGTACATGGATGCAGACGCCACGTTTTCATGACATTATAATCTTCAACACAGGACACTGGTGGTGGGCACCCTCGAAATTTGACCCGGTTAAATCACCCTTGCTCTTCTTTGAAAATGGTCAGCCTGTCATCCCTCCCATTCCTCCTGATGTTGGATTGGACTTGGTTTTGAAACACATGATTTCATATGTGAAGAAACAAATGCGGCCAAATACAATCATATTCTTTCGTACTCAGTCGCCAAGACATTTCGAAGGAGGTGATTGGGACCAAGGCGGTTCTTGTCCACAGCGACAACCTTTGTTGTCAGAACAGGCCGAGGAGCTCTTTGCTGTGAACAAAAATGGGACAAACGTGGAAGGGAGGCTGGTAAACCGGCACCTCTATGAAGCCATTAAAGGCTCCGGTTTCAATGTTTTGGACATAACAAAGATGAGCGAGCTAAGAGCCGATGCTCATCCATCGTCAGCAGGTGGTAAGAAACACGACGATTGTATGCATTGGTGCTTACCCGGAATTACAGACACTTGGAATGACTTATTTGTACAGTATTTGGAGAACAAGAAATTTAGAAACTAA 1257 44.87 MAVRDHHYQNHAKRIPLFPFLSLLCFSSFFFILSLLRKSSVSPQSQQSFHFGDDNRGREQGNLPVGRCDYSEGTWIYDQNVRSARYDGSCKEIFKGWNCVAANKSNALDLIKWRWKPWQCDLPSFGPLSFMEKYRDVSIGFVGDSLNRNMFVSLFCSLKHVSSDVKKWRPAGADRGYTFLKYNLTISYHRTNLLARYGRWSANAHGGKLESIGFKEGFRVDVDIPEGTWMQTPRFHDIIIFNTGHWWWAPSKFDPVKSPLLFFENGQPVIPPIPPDVGLDLVLKHMISYVKKQMRPNTIIFFRTQSPRHFEGGDWDQGGSCPQRQPLLSEQAEELFAVNKNGTNVEGRLVNRHLYEAIKGSGFNVLDITKMSELRADAHPSSAGGKKHDDCMHWCLPGITDTWNDLFVQYLENKKFRN 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18920076 18923118 + Bpe017875.1 Bpe05g00456 104233

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00456 418 Pfam PMR5 N terminal Domain 67 121 IPR025846 -
Bpe05g00456 418 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 122 409 IPR026057 GO:0016740
Bpe05g00456 418 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 6 415 IPR029962 GO:0016413
Bpe05g00456 418 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 13 6 415 IPR029968 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00456 - - - mnt:21385783 639.032
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00456 Bpe-Chr5:18920076 Bpe02g00724 Bpe-Chr2:5019186 1.15E-43 dispersed
Bpe05g00449 Bpe-Chr5:18878448 Bpe05g00456 Bpe-Chr5:18920076 7.49E-54 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g807 . . . . . . Bma05g00633 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe05g00456 . . . . Cmo16g00314 . . . . Cpe14g00245 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008103 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 0 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00456 Bpe_Chr05 FPKM 10.198852 11.279774 9.291009 10.191864 7.166029 7.295273 7.952843 12.209204 12.067596 10.985317