Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00461 ATGGCCAACAACCCTCAATATCCTGGTCCCCAGCCTCTCAGGCCTCCCATTGTTGGTCCAGTTGATCCAAATCGACAATATAATCCAGCAATTTCTAATCAACAGTTTCGACCAATGCTTCCAGCATCACTATCGCAGCAGTTTGTTCCTGTCGGCTCTCAGCATTTTCAACACCATGGACAAGGTGTTCCAGTGATGAATGTTAGTCTTCCTCCTCAACCTCCGCAACAGCAACTCTCTCAACCAGGGGCCCAGTTACCTCCAAGGTTTGGTGAGCCAGGTCATGGAACTCTTCCATCACAATTAATTCCCCTGCCAGTTGGTCATCCAAATAGACCATTTTCATCAGATTTGCCATTGCCACAACAAAACACTCAGCCTGGAACTACTTATATGCCCAGCTTAGGTGTCTCGGGATCATCTAATGGTTCATCCTACAATTTTGGGTCTTATGGCCAACCACAAAATTATAATTTGTCCACCTCTCAGCATGCATCACAAATGATGCATGCATCAATTATATCTTCTGGAGTCCAGACAAAATTAGCACCTGACATTCCAGGAGGTGCTACAGTCACTCCTCTGCTTCGTACTGGAGAACAACAAGCTTTCCCTATGGCTCCTGCTGCTTCAGTGATTGGTGTCCAGCCCGCCCACAGTGAAGTGTCCTCAACTGATTGGAAAGAGCATATTTCGGCTGATGGAAGAAGATATTATTATAACAAGAAAACGAAAGTATCTAGCTGGGAAAAGCCTTTGGAATTGATGACGCCTATTGAGAGGGCAGATGCATCGACAAACTGGAAGGAATTTACAAGTCCTGATGGAAGGAAGTATTACTATAATAAAACCACCAAAGAATCAAAATGGATAATTCCTGAAGAACTGAAGTTGGCTAGAGAGCAGTTAGAAAATGCATCATCCAGTGGAAGACATACAGAAATCTGTCTTCCCGACCAAGCTTCTGTCTCTCCTTTGAAAGTACCAGCTACTGCAGATGTGTCACCTTCCTTGACCCAAAGGGTACTAACTAGCCCCGTGGCCGAGGCAGCTCTTGTTGCTGCAGGTGATCAAATACCTGAGAGGCTTACTCCAACAACATCTACTTCACCTACTATAACTTCTGTTTCTGAAACAAATAAGGATGCGATTCAGATGCCTGTGAATAATGTTACATCTGATAACACGGAAGCTGATAGAGCTGCTGGAACAACTGTGGCTGTTATCAATACTAGCGTGGAGAGAATAGATGAAATCAAGAATCCTTCAGCTCAGGGTGTTGACAGTGCTGTTAATGGGTCTCACATCCAAGATTCAAAGGAAATCAACAGAGAGACGATGGAGGATAAAGTCAATGATATTGTCCTGGAAGAGAGACTTGTTGATCAGGATACTTCAGTTTATGGTGATAAGCAGGAAGCTAAAAATGCATTTAAAGCGCTCTTGGAGTCCGCAAATATTGGATCTGATTGGACTTGGGATCGGGCTATGAGAATTATTATTAATGATAAGAGGTATGGTGCTCTGAAATCACTAGGAGAGCGGAAACAAGCTTTCAATGAGTTCTTGGGCCAAAGGAAAAAACATGAAGTAGATGAAAGACGCATTAAACAGAAAAAAGCACGAGAAGAATTCAAAATGATGTTAGAAGAATCCACGGAGCTGAATTCATCCATGAGATGGAGTAAAGCAGAGCGAATCTTTGAGAATGATGAACGATTCAGAGCAGTTGAACGAGATAGAGACCGTCGTGATCTTTTTGATATTTTCTTGGAAGAGCTAAAAAATAAGGAACGTGGAAAAGCTCAAGAAGAGCGCAAACGGAATATCATGGAATACAGAAAATTTTTGGAATCTTGTGACTTCATTAAGGCTAATAGCCAATGGCGAAAAGTACAAGAGCGCTTAGAGGCTGATGTTAGATGTTCTAATCTTGAAAAGATAGATCGTTTGGAAATCTTCCAGGAACATTTACACGAATTAGAAAAGGAGGAGGAAGAGCAAAGGAGGATTCAGAAGGAGGAATTAAGAAAATCAGAGCGCAAAAATCGCGATGAGTTTCGTAAACTGATGGAAGAACATGTTGCGGGAGGGATCATTACACCAAAAACCCACTGGCGTGATTATTGCATGAAGATAAAAGATATACCTGCATATTTAGCAGTTGCTTCAAATACCTCTGGTTCCACTCCGAAAGATTTGTTTGAAGATGTTGCCGAGGAGCTTCAGAAACAATATCAAGAAGATAGAACTCGAGTCAAAGATGCAGTAAAGTTGGGAAAGATTCAGCTTACAACGACCTGGACCCTTGAAGACTTTAAAGCTGCTATTTCAAAGGATGTAAGCGCTCCACCAGTGTCGGATGTCAACATAAGCCTAGTATTTGATGAGCTGCTGGAACGAGTGAAGGAGAAAGAGGAAAAAGTAGCGAAGAAGCGTAAACGTCTTGAAGATGATTTCTTTGAGATGTTATGTTCTATCAAGGAAATATCAGCATCTTCTAAGTGGGAGGATTGTAAGCTATTTCTAGGAGGAAGCCAAGAATGGAGTTCCATTGTAGAAGAGAGTCTTTGTAAGGATGTATTTGAAGACTACGTTGCGCAATTGAGGGAGCAGGAAAAAGAGAATGAGCGAAAGCGGTACGATGAAAAGGCGAAAAAGGAAAAAGAAAGGGAGGAAAGAGAAAAAAGAAAGGAAAGAAAGAGAAGGGATAAAGATGGAGGACGGGGAAAAGAAAAGGATTACTATAAGAAGGATGATATTGACAGCAGAGATGCAGACGTATCTGATATCTATTTATCAAAAGATTACAAGCGATTAGAACCGGAAGGCAACAAGAAAGAACGGAAGCGACATAATAGTTTTGTTGATTATTCAAGTGAAGATGAAAATGGAAATGATCAGTCTAAGAAGTCTCATCCACATAATGAGCGAAAAAAATCAAGACGGCATGCACCTGCTCCCGAATCAGATAGTGAAAGCAGACACAGAAAACACAAGAAAGACCACCGTAATAGTCCTCGTGGAAATGATGATAGAGAGGAGCTTGAGGATGGGGAGTTTGGTGATGATGGGGATAGTAGGTGGTGA 3090 41.84 MANNPQYPGPQPLRPPIVGPVDPNRQYNPAISNQQFRPMLPASLSQQFVPVGSQHFQHHGQGVPVMNVSLPPQPPQQQLSQPGAQLPPRFGEPGHGTLPSQLIPLPVGHPNRPFSSDLPLPQQNTQPGTTYMPSLGVSGSSNGSSYNFGSYGQPQNYNLSTSQHASQMMHASIISSGVQTKLAPDIPGGATVTPLLRTGEQQAFPMAPAASVIGVQPAHSEVSSTDWKEHISADGRRYYYNKKTKVSSWEKPLELMTPIERADASTNWKEFTSPDGRKYYYNKTTKESKWIIPEELKLAREQLENASSSGRHTEICLPDQASVSPLKVPATADVSPSLTQRVLTSPVAEAALVAAGDQIPERLTPTTSTSPTITSVSETNKDAIQMPVNNVTSDNTEADRAAGTTVAVINTSVERIDEIKNPSAQGVDSAVNGSHIQDSKEINRETMEDKVNDIVLEERLVDQDTSVYGDKQEAKNAFKALLESANIGSDWTWDRAMRIIINDKRYGALKSLGERKQAFNEFLGQRKKHEVDERRIKQKKAREEFKMMLEESTELNSSMRWSKAERIFENDERFRAVERDRDRRDLFDIFLEELKNKERGKAQEERKRNIMEYRKFLESCDFIKANSQWRKVQERLEADVRCSNLEKIDRLEIFQEHLHELEKEEEEQRRIQKEELRKSERKNRDEFRKLMEEHVAGGIITPKTHWRDYCMKIKDIPAYLAVASNTSGSTPKDLFEDVAEELQKQYQEDRTRVKDAVKLGKIQLTTTWTLEDFKAAISKDVSAPPVSDVNISLVFDELLERVKEKEEKVAKKRKRLEDDFFEMLCSIKEISASSKWEDCKLFLGGSQEWSSIVEESLCKDVFEDYVAQLREQEKENERKRYDEKAKKEKEREEREKRKERKRRDKDGGRGKEKDYYKKDDIDSRDADVSDIYLSKDYKRLEPEGNKKERKRHNSFVDYSSEDENGNDQSKKSHPHNERKKSRRHAPAPESDSESRHRKHKKDHRNSPRGNDDREELEDGEFGDDGDSRW 1029
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18944837 18961789 - Bpe017880.1 Bpe05g00461 104238

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00461 1029 PANTHER PRE-MRNA-PROCESSING PROTEIN PRP40 2 1022 IPR039726 GO:0045292
Bpe05g00461 1029 SUPERFAMILY FF domain 806 875 IPR036517 -
Bpe05g00461 1029 Coils Coil 871 904 - -
Bpe05g00461 1029 MobiDBLite consensus disorder prediction 982 996 - -
Bpe05g00461 1029 CDD WW 266 295 IPR001202 GO:0005515
Bpe05g00461 1029 SUPERFAMILY FF domain 531 594 IPR036517 -
Bpe05g00461 1029 Coils Coil 644 693 - -
Bpe05g00461 1029 ProSiteProfiles FF domain profile. 606 660 IPR002713 -
Bpe05g00461 1029 MobiDBLite consensus disorder prediction 53 97 - -
Bpe05g00461 1029 SUPERFAMILY WW domain 226 260 IPR036020 GO:0005515
Bpe05g00461 1029 SUPERFAMILY WW domain 255 296 IPR036020 GO:0005515
Bpe05g00461 1029 ProSiteProfiles FF domain profile. 678 741 IPR002713 -
Bpe05g00461 1029 SUPERFAMILY FF domain 601 667 IPR036517 -
Bpe05g00461 1029 Pfam FF domain 612 657 IPR002713 -
Bpe05g00461 1029 Pfam FF domain 540 588 IPR002713 -
Bpe05g00461 1029 Pfam FF domain 682 737 IPR002713 -
Bpe05g00461 1029 Pfam FF domain 473 522 IPR002713 -
Bpe05g00461 1029 SUPERFAMILY FF domain 468 525 IPR036517 -
Bpe05g00461 1029 MobiDBLite consensus disorder prediction 873 1029 - -
Bpe05g00461 1029 Coils Coil 732 759 - -
Bpe05g00461 1029 ProSitePatterns WW/rsp5/WWP domain signature. 227 252 IPR001202 GO:0005515
Bpe05g00461 1029 ProSiteProfiles FF domain profile. 538 593 IPR002713 -
Bpe05g00461 1029 Gene3D FF domain 807 880 IPR036517 -
Bpe05g00461 1029 SUPERFAMILY FF domain 673 748 IPR036517 -
Bpe05g00461 1029 Coils Coil 795 819 - -
Bpe05g00461 1029 Gene3D FF domain 600 670 IPR036517 -
Bpe05g00461 1029 Gene3D FF domain 527 599 IPR036517 -
Bpe05g00461 1029 Gene3D FF domain 671 752 IPR036517 -
Bpe05g00461 1029 MobiDBLite consensus disorder prediction 873 974 - -
Bpe05g00461 1029 Gene3D - 220 263 - -
Bpe05g00461 1029 Gene3D - 264 309 - -
Bpe05g00461 1029 ProSiteProfiles WW/rsp5/WWP domain profile. 227 254 IPR001202 GO:0005515
Bpe05g00461 1029 PANTHER PRE-MRNA-PROCESSING PROTEIN 40B 2 1022 - -
Bpe05g00461 1029 CDD WW 225 254 IPR001202 GO:0005515
Bpe05g00461 1029 ProSiteProfiles FF domain profile. 471 525 IPR002713 -
Bpe05g00461 1029 SMART ww_5 263 295 IPR001202 GO:0005515
Bpe05g00461 1029 SMART ww_5 222 254 IPR001202 GO:0005515
Bpe05g00461 1029 SMART FF_2 680 741 IPR002713 -
Bpe05g00461 1029 SMART FF_2 538 593 IPR002713 -
Bpe05g00461 1029 SMART FF_2 471 525 IPR002713 -
Bpe05g00461 1029 SMART FF_2 606 660 IPR002713 -
Bpe05g00461 1029 SMART FF_2 813 868 IPR002713 -
Bpe05g00461 1029 Pfam WW domain 226 252 IPR001202 GO:0005515
Bpe05g00461 1029 Pfam WW domain 267 293 IPR001202 GO:0005515
Bpe05g00461 1029 ProSiteProfiles WW/rsp5/WWP domain profile. 262 295 IPR001202 GO:0005515
Bpe05g00461 1029 Gene3D FF domain 471 526 IPR036517 -
Bpe05g00461 1029 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00461 K12821 PRPF40, PRP40; pre-mRNA-processing factor 40 - csv:101220076 1067.37
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe04g00145 Bpe05g00461 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00145 Bpe-Chr4:971559 Bpe05g00461 Bpe-Chr5:18944837 0 dispersed
Bpe05g00461 Bpe-Chr5:18944837 Bpe10g00739 Bpe-Chr10:13691529 6.46E-31 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g614 . Blo12g00995 . Bda03g00163 . Bpe04g00145 . . . . Cma01g01771 Cma09g00307 Car01g01380 . . Cpe06g00216 . . . . . . . . . . . . . . . . . Cone17ag0900 Cone20ag0242 Lsi04g01460 Csa04g02500 . . . . . . . Bpe05g00461 . . Sed13g1825 Cmo01g01829 Cmo09g00308 . . . Car09g00259 . Cpe02g00234 Bhi09g03198 Tan01g4668 Cmetu07g0441 . Hepe01g1848 Mch11g0381 . . . . . . . . . . Chy07g00208 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004781 0 13 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 2 0 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00461 Bpe_Chr05 FPKM 5.995495 6.932909 8.774481 9.276014 6.777401 7.03932 6.302562 10.506269 7.994058 8.719602