Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00472 ATGGAGCCGATGGGAGCCATTGCAGAGGGAGAGTGGATTTCTCTTAGTGGGATTTATACAGCAGAGGAGGCCAACTTCATGGCTCAGCTGCTGAGCAACTCTTCTGATCCAAGCCACGGGAATGGAGTTTTTCAATCCGCTTTTTGGCCTGGAAACGATCAATCCTTAATGAATATGGCAACTACTAGTTTTTCACCCTGCGAGAACTTGTACTTGAGCGATTCGAACCCGGTTTTGCAAATGCATTATCACGTTCATGACGAGGAGTGTTTAAATCGAGAAAAGAGCGAAAGCGTTGAAAATAGAACTACGCAATCGGAACCTTTTCGGGAAGAAAAAGACGGTCAGATCGAGAGTTCAAAGAAAAGATCTTGGAATTCAAGCGAAGTAAGTTCATATTTTGTTCTAAATGATACTAATCATCACTCAACAATGCAGATTCAAAAAAGTAAGAGAAATGTGAGATCAAAGAAGAGCCAGAAAGGTGGCTTAACCAGCTGCAATGAAGATGGAAATGGCGGGTTCAACGGGCAAAGCACGAGCAGCTGCTGCTCGGAGGACGACTCGAACGAAGAACTCACTTCGAGTTCGAAAGGCAAAACCCGAGCCAACAGAGGGTCGGCCACTGACCCTCAGAGTCTCTATGCAAGAAAGAGAAGAGAGAGGATCAATGAGAGGCTGAAGATTCTTCAAACCCTAGTTCCAAATGGAACAAAGGTTGATATCAGCACAATGCTTGAAGAAGCTGTTCACTATGTTAAGTTCTTACAGCTCCAAATCAAGCTGTTAAGCTCAGATGATCTGTGGATGTATGCTCCGATTGCCTACAATGGAATGGACATAGGCCTGGATTTGAAGCTCATAGCACCAAAACAATCATAA 882 44.1 MEPMGAIAEGEWISLSGIYTAEEANFMAQLLSNSSDPSHGNGVFQSAFWPGNDQSLMNMATTSFSPCENLYLSDSNPVLQMHYHVHDEECLNREKSESVENRTTQSEPFREEKDGQIESSKKRSWNSSEVSSYFVLNDTNHHSTMQIQKSKRNVRSKKSQKGGLTSCNEDGNGGFNGQSTSSCCSEDDSNEELTSSSKGKTRANRGSATDPQSLYARKRRERINERLKILQTLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLDLKLIAPKQS 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19025974 19027125 - Bpe017892.1 Bpe05g00472 104249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00472 293 MobiDBLite consensus disorder prediction 159 211 - -
Bpe05g00472 293 MobiDBLite consensus disorder prediction 93 123 - -
Bpe05g00472 293 PANTHER TRANSCRIPTION FACTOR BHLH139-LIKE 85 288 - -
Bpe05g00472 293 SMART finulus 213 262 IPR011598 GO:0046983
Bpe05g00472 293 MobiDBLite consensus disorder prediction 141 218 - -
Bpe05g00472 293 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 85 288 - -
Bpe05g00472 293 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 206 273 IPR036638 GO:0046983
Bpe05g00472 293 MobiDBLite consensus disorder prediction 93 120 - -
Bpe05g00472 293 Pfam Helix-loop-helix DNA-binding domain 217 257 IPR011598 GO:0046983
Bpe05g00472 293 CDD bHLH_AtIND_like 208 270 - -
Bpe05g00472 293 Gene3D - 209 265 IPR036638 GO:0046983
Bpe05g00472 293 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 207 256 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe02g00449 Bpe05g00472 CCT
Bpe02g00449 Bpe05g00472 ECH
Bpe02g01776 Bpe05g00472 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00472 Bpe-Chr5:19025974 Bpe11g00010 Bpe-Chr11:75226 7.55E-27 dispersed
Bpe05g00472 Bpe-Chr5:19025974 Bpe02g01776 Bpe-Chr2:20088959 1.92E-60 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21435 PF00010 HLH 2.20E-09 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00472 - - dzi:111308317 266.159