Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00474 ATGGCTGCGTCCCTTCTCTCTGCCCCTCCCTCGTCTCCCGCAGCTGAATCCCGAACTATTTGTCATCTCGTTCCCTCGATTTCGCTTCCAAAGTCCTCTTTTCTCTGCGGTTGTAATAATCTCCTTTCTTCTTCTACTCGGTCTTTATCTTGCTCGAGAAGAAGCGGTCATCGGAGAAGTTTCAAATCTCCTGTCGCTGAATCTTTCGACCACATCCCCAAGCAGTTCAGAGAAGAAAATCTCAAAGATGGGTTGATGGACAATTACAAGAATACTCCACAATATCTCTATGGTCTTTCTCCGTCTCAAATGGACATGTTCATGACTGAAGATAATCCTGTGCGCGGGCAGTCAGCATTAGTCACAGAGGAAAATATTTCATCTGCTCACAATTATTTAAATCATGGGGGAATGTGGAGTATGTCCGGAATGAATGGAAAAGGTCCTTCAAAATATAGTATGAGTGTAAGCATGTATCGTGGAGGTGGAAGAGGATATGGTAGGCCACGAACGGCTCCTCCAGATTTACCTTCTCTGCTCTTGGATGCTCGAATATGCTATTTAGGCATGCCCATTGTACCTGCAGTAACCGAGCTTATTGTTGCTCAATTTATGTGGTTAGACTATGACAACCCTTCAAAACCTATATATTTATATATTAATTCATCTGGGACTCAGAATGAGAAGATGGAGACAGTTGGATCTGAAACTGAGGCATATGCTATAGCTGATATGATGGCTTACTGCAAATCAGATGTTTACACAGTAAACTGTGGCATGGCGTACGGTCAAGCTGCAATGCTACTATCACTTGGAGCCAAGGGCTATCGTGCTGTACAGCCTAATTCCTCTACTAAATTATATTTGCCAAAAGTCAACAGATCAAGCGGGGCTGTTATAGATATGTGGATTAAGGCCAAGGAACTTGATGCAAATACCGAGTATTATATTGAGCTGCTGGCTAAGGGAGTAGGAAAAACTAAGGAAGAAGTAAACAAAGATGTCCAAAGACCGAAATATTTACAAGCACAAGAAGCTATAGACTATGGCATTGCAGACAAGATAATTAGCCCACAAGACGATGCATTCGAGAAACGGAACTATGACGAGATGCTCGCTCAGTCAAGAGCAATGAGAAAACGCCCAGGAGGCAATCCGCAAGCTGCCCCCTCTGGATTTAGGTGA 1185 43.46 MAASLLSAPPSSPAAESRTICHLVPSISLPKSSFLCGCNNLLSSSTRSLSCSRRSGHRRSFKSPVAESFDHIPKQFREENLKDGLMDNYKNTPQYLYGLSPSQMDMFMTEDNPVRGQSALVTEENISSAHNYLNHGGMWSMSGMNGKGPSKYSMSVSMYRGGGRGYGRPRTAPPDLPSLLLDARICYLGMPIVPAVTELIVAQFMWLDYDNPSKPIYLYINSSGTQNEKMETVGSETEAYAIADMMAYCKSDVYTVNCGMAYGQAAMLLSLGAKGYRAVQPNSSTKLYLPKVNRSSGAVIDMWIKAKELDANTEYYIELLAKGVGKTKEEVNKDVQRPKYLQAQEAIDYGIADKIISPQDDAFEKRNYDEMLAQSRAMRKRPGGNPQAAPSGFR 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19036331 19041394 - Bpe017894.1 Bpe05g00474 104251

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00474 394 Gene3D - 164 362 - -
Bpe05g00474 394 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 61 386 IPR023562 -
Bpe05g00474 394 Pfam Clp protease 178 357 IPR023562 -
Bpe05g00474 394 MobiDBLite consensus disorder prediction 373 394 - -
Bpe05g00474 394 PRINTS Clp protease catalytic subunit P signature 215 235 IPR001907 GO:0004176|GO:0004252|GO:0006508
Bpe05g00474 394 PRINTS Clp protease catalytic subunit P signature 175 190 IPR001907 GO:0004176|GO:0004252|GO:0006508
Bpe05g00474 394 PRINTS Clp protease catalytic subunit P signature 334 353 IPR001907 GO:0004176|GO:0004252|GO:0006508
Bpe05g00474 394 PRINTS Clp protease catalytic subunit P signature 255 272 IPR001907 GO:0004176|GO:0004252|GO:0006508
Bpe05g00474 394 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT-RELATED PROTEIN 1, CHLOROPLASTIC 61 386 - -
Bpe05g00474 394 SUPERFAMILY ClpP/crotonase 170 360 IPR029045 -
Bpe05g00474 394 CDD S14_ClpP_2 175 355 IPR001907 GO:0004176|GO:0004252|GO:0006508
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00474 K01358 clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] - mnt:21387209 617.076
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00224 Bpe-Chr5:14266042 Bpe05g00474 Bpe-Chr5:19036331 2.32E-50 dispersed
Bpe05g00474 Bpe-Chr5:19036331 Bpe07g00197 Bpe-Chr7:1357051 1.19E-40 dispersed
Bpe05g00474 Bpe-Chr5:19036331 Bpe11g00111 Bpe-Chr11:751234 2.23E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g695 Blo02g00932 . . Bda08g00678 . . Bma05g00652 . . Cmo11g01416 . . . . . Cpe04g00324 . . . . . . . . . . . . . . . . . . . . Csa07g00689 . Cme01g00116 . . . . . Bpe05g00474 . . . . . Cma11g01702 . Car11g01140 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011358 1 1 1 2 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00474 Bpe_Chr05 FPKM 72.233429 80.728371 119.391518 124.34124 77.267975 78.360931 78.038979 116.084473 106.190834 119.093796