Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00475 ATGAAATTCATGAAACTTGGATCAAAGCCAGATGCATTTCAGACAGATGGGAATAACATCAGGTATGTGGCAAGTGAGCTGCCTTCAGATATCATAGTCAATGTAGGCAACGTAAAGTTTTACCTGCACAAGTTTCCACTTCTGTCGAAGAGTGTCCATTTACAAAAATTGGTCACCATCACGACCGGAGAGAATGGCGATGAAGTTGACATTTCCGACATTCCGGGTGGGCATACTGCTTTCGAACTATGTGCCAAATTTTGTTATGGAATGATTGTCACACTCAATGCCCACAATGTTGTGGGGGCCAGGTGCGCAGCCGAATACCTTGGAATGCATGAAATTATCGAAAAAGGCAATCTTATTTACAAGATTGATGTCTTCCTTACGTCGAGCGTCTTTAGGAGCTGGAAGGACTCTATCATTGTTCTTCAAACTAGCAAGTTATTATTGCCATTTTCGGAGGATCTTAAATTGGTCAATAATTGCATCGAATCTATATCCACTAAAGCTTGTGTTAATGTTTCTAAAGTGGACTGGTCTTATACGTATAATCGGAAGAATCTTGTGGAGGAGAATGTGTGTGATCCGAAACGGAACGGCGTGAGGATCCGCGCTGTGCCTAAAGACTGGTGGGTTGAGGACTTGTGTGAGCTTGAAATTGATTTGTATAAGCGGGTTTTGATGAATATAAAAGCAAAAGCATTACTTCCTAATGAAGTGGTTGGTGAATCTGTAAAAGCTTATGCATACAGATGTTTGCCTGTCTTTAACAAGGGTGTGATTCCTTGTGGGGATGTAGACAAATATAGATCGGTCGTGGATTCAATCATATGGCTGTTACCTGCTGAAAAAGGCAGTGTTTCATGTAGCTTTTTGCTGAAGTTGTTGAAAGCAGCCATTTGGTTGGACTGCGAAGATATATGCAAGGAAGAGTTGGTTAGGAAAATAGGACAGCAACTTGAGGAGGCTTCTGTTAGTGATCTTTTGATAAGGTCAAAGGAAGGAGAAACTACCATATATGATGTCAGGACTGTGCAGAAATTGGTGGAAGAGTTCAGATCGCAGGATCGGAATGATGAGATTGAAATATTCGAAGAAGCTGAAGGGTGTAAAGGGTCAGGAAAGACGAGAATTTTATCGGATGCCTCCAAGCTGATGATGGCAAAACTAATTGATGGGTATCTAGCTGAAATCGCAAAGGATTCAAATTTGCCGTTGTCAATGTTCGTTGAGCTTGCAGGATCGGTATCTGGGATTTCTCGACCTTCCCATGATGGACTTTATCTAGCGATCGACACTTTCCTCAAGGCAAGATTGATTGACATCGTGATGGGGGTTGATCCTAGTCAAAGAATAGAAGGGATCAGTCTAAGTCCCGACGAATACTTAAGACAGAGCGAGAAAGAAATAAATCTTCTTGTCAAAAATGGTCAGATCCCAGAGTTGAAGTCCGTTGAGCATCAGCTATGTGAAAACTGTATTTTTGGAAAACAGAAACATATCAGTTTCTTAAAGGTTGGGAATGAGCTGAAGAAGAAAAGATTGGAATTGGTGCACACCGAAATGTGGGGACTCGCACCCGTTTCTTCTCTTGGTGGATCATACTTTTACGTAACATTCAAAAATGATTCAACAAAAAATGTATGGGTCTACTTCATGAAAAAAAAGTCTGATGTATTTAGTGTTTTCAAGAAGTGGAAGGACTTAGTTGAAAATGAAACGAATATGAAAGTGAAGTGTTTGAGGTCCGACAACGGAGGCGAGTACATCGATGCCAATTTCAAAGAATTTTGTACTATGAATAAGATCAAGATGGAGAATACTATTCTTGAAACACCTCATGAAGTAGCTAAAAGGATGAATAGAACACCGAATGAACGTGCAAAGAGCATGAGATTACACGTTAGGTTGCCTAAATATTTTTGGGCAAATGCAGTCAACACTGCAGCCTCCTTGATCAATAGAGGACCCTTTGTACCTTTAGATTTCAAACTTTCAGAAGAAGCTTGGAGCGGTAAAAAGGTAAACTTTAAAAGTGTCATCCATTTAACAAAGAACCCGGTTTATCATGGTAAGACAAAGCATATACAAGTGCATTATCACTTCATTAGATCCGCCTTAGAAGATGGAGTATTGGTGCTTGAAAGGATCCTAGAGAGTCGAAATCCAGTTGATATGTTGACGAAAGCTGTGATGAGTGAGAAACTGAAGTTATGCGCAACTTCAATCGAACTTCTTGGATGA 2247 40.36 MKFMKLGSKPDAFQTDGNNIRYVASELPSDIIVNVGNVKFYLHKFPLLSKSVHLQKLVTITTGENGDEVDISDIPGGHTAFELCAKFCYGMIVTLNAHNVVGARCAAEYLGMHEIIEKGNLIYKIDVFLTSSVFRSWKDSIIVLQTSKLLLPFSEDLKLVNNCIESISTKACVNVSKVDWSYTYNRKNLVEENVCDPKRNGVRIRAVPKDWWVEDLCELEIDLYKRVLMNIKAKALLPNEVVGESVKAYAYRCLPVFNKGVIPCGDVDKYRSVVDSIIWLLPAEKGSVSCSFLLKLLKAAIWLDCEDICKEELVRKIGQQLEEASVSDLLIRSKEGETTIYDVRTVQKLVEEFRSQDRNDEIEIFEEAEGCKGSGKTRILSDASKLMMAKLIDGYLAEIAKDSNLPLSMFVELAGSVSGISRPSHDGLYLAIDTFLKARLIDIVMGVDPSQRIEGISLSPDEYLRQSEKEINLLVKNGQIPELKSVEHQLCENCIFGKQKHISFLKVGNELKKKRLELVHTEMWGLAPVSSLGGSYFYVTFKNDSTKNVWVYFMKKKSDVFSVFKKWKDLVENETNMKVKCLRSDNGGEYIDANFKEFCTMNKIKMENTILETPHEVAKRMNRTPNERAKSMRLHVRLPKYFWANAVNTAASLINRGPFVPLDFKLSEEAWSGKKVNFKSVIHLTKNPVYHGKTKHIQVHYHFIRSALEDGVLVLERILESRNPVDMLTKAVMSEKLKLCATSIELLG 748
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19047351 19055890 + Bpe017895.4 Bpe05g00475 104252

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00475 748 PANTHER OS12G0117600 PROTEIN 1 438 IPR043454 -
Bpe05g00475 748 ProSiteProfiles BTB domain profile. 29 97 IPR000210 GO:0005515
Bpe05g00475 748 SUPERFAMILY POZ domain 22 117 IPR011333 -
Bpe05g00475 748 Gene3D Potassium Channel Kv1.1; Chain A 12 122 IPR011333 -
Bpe05g00475 748 Pfam NPH3 family 210 438 IPR027356 -
Bpe05g00475 748 Gene3D - 508 659 IPR036397 GO:0003676
Bpe05g00475 748 ProSiteProfiles NPH3 domain profile. 210 495 IPR027356 -
Bpe05g00475 748 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN NPY2 1 438 IPR029960 GO:0009958
Bpe05g00475 748 Pfam BTB/POZ domain 27 118 IPR000210 GO:0005515
Bpe05g00475 748 CDD RNase_HI_RT_Ty1 679 732 - -
Bpe05g00475 748 ProSiteProfiles Integrase catalytic domain profile. 516 675 IPR001584 GO:0015074
Bpe05g00475 748 SUPERFAMILY Ribonuclease H-like 515 663 IPR012337 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00475 - - - qsu:112003409 627.476
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe05g00475 Bpe07g00274 CCT
Bpe05g00475 Bpe07g00274 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00475 Bpe-Chr5:19047351 Bpe06g00011 Bpe-Chr6:136170 3.10E-175 dispersed
Bpe09g00498 Bpe-Chr9:13598365 Bpe05g00475 Bpe-Chr5:19047351 2.92E-13 transposed
Bpe05g00475 Bpe-Chr5:19047351 Bpe07g00274 Bpe-Chr7:1964944 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g693 Blo02g00933 Blo03g00074 Bda06g01203 Bda08g00675 Bpe07g00274 . . Bma12g00281 . . . . . . . . . . . . . . . . Cla10g01000 Cam10g1022 Cec10g1053 Cco10g1018 Clacu10g1040 Cmu10g1824 Cre10g1197 . . Cone3ag1025 Cone10ag1040 . . . . . . . . . Bpe05g00475 . . . Cmo04g00485 Cmo16g00344 . . . . Cpe14g00271 Cpe01g00406 Bhi11g01141 . . . . Mch10g0450 . . . . . . . . Lsi03g01029 . . Cme07g02176
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001152 3 7 3 2 3 2 2 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 8 2 2 79
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00475 Bpe_Chr05 FPKM 3.359087 3.683075 6.18294 5.854965 7.843366 7.365938 9.279504 9.057794 8.922339 9.964737