Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00488 ATGGATGATAACAGACTTGGTGATGATGAGGGTTGCTCTACAGGGACAACGAGGAAACTGTTGAACAATTTATCAGAGTTGAATTATCACGACATTCAATCAGTACAAAATCTGACACAAAAAACAAGCCCTGAAGAACAGACAGAAGTCCGACAGAAAATATTGCAACAGACACAAGTAGAAGTCTCTGAAGAACTTTTAAGTAAACTGTCAGAGAAAAATCATCTCAGTGATTCTGAATTTGCTCAAAATAATCCAGCTGGGGTTGATGTTATTCAAGAATTTGAGCCGCATTTTGCTGATTGTTCTCTTGAGGATGTTCTTAAACTTCCTTTCGTAGATGCATCAAATTCAGATAATCAGTTAAAATCATTTGTTGAAGATAGCATTAACGAGTTAAAAACACCAATTAAAAGATCAGCCAAATATTCTAAACAAGTTAACTGTCAAACTTCAAAATCTAGACGGAGAAAATATATGTTGAGATCACTGGGTCACACTGACAGGGTATTGCGCTCAAGAACACAAGGTAATGCCACTGCTTCTAAACCAAGTAATCCTGTCAGTAGTGTTAGATGTGAAGGAGATGGAAAAGGTAGGAAGAAGGAAAGAAGAAAGAAGACTAAAGTAGCAGACGAGTTTTCAAAAATTAGAAATTGCCTGAGATATTTCCTTAATCGAATGGGATATGAACAAAGCTTCATTGCTGCCTATTCTGGTGAAGGTTGGAAAGGATACAGCTTTGAGAAGTTAAAGCCAAAGAAGGAACTTCAACGGGCCACCAGTGAAATAATGAGACGCAAATTGAAAATAAGAGATCTTTTTAAACACCTTGATTCTCTTTGTGTTAATGGAAGATTTCCAGAGTCTCTCTTTGATTCTGAAGGACAAATTGACAGTGAGGATATATTCTGTGCCATATGTGGATCCAAAGAAATGTCTGCTAATAATGACATTATACTCTGCGATGGTGCTTGTGATCGTGGATTTCACCAGCTCTGTTTAGACCCACCATTGCTGAATGAAGATATTCCCCCAGATGATGATGGTTGGCTATGCCCTGGTTGTGATTGCAAAGTTGACTGCATTGATTTGATTAATGACGCTCAAGGAACCAATTATTCTCTCACTGACAGTTGGGAGAATATTTATCCTGAGGCTGCTGTTGTAGTTGCTGGACAAAGTCTTGATCTGACATTGGGTCTCCCTTCAGATGATTCGGATGATAATGATTTTGATCCACATGATCCAGATACTGATGAGCAGGGAGATGAATCAAGTCCTGTTGTATCTGATAATAATATCGAATCTGAAAAATTGGTGGCTTCGCCTAAAAACAACCAATATCTGGGACTTCCTTCCGATGATTCGGACGATGATGATTATAATCCCGGGGCTCCAGATACTGAAGAGAAAATTAAGTCAGAAAGTTCAAGTTCTGATTTTACTTCTGATTCTGAGAATCTGGCAGCCATTTTTGAAGATGATAGGCCTTCTAGGAATGAAGATGACAAGAGTACCTGTTCTCATATAGGCATTGACAAAAAGAGCTGCAGACGTGGTCTAGGAAAGCATTTATTGAATGATGAGCTTTCTTCTGTACTAAACTTGGAACCTCGTAATGATGGACTTTCACCTATTGCCAGCAGACGGCATGTTGAACGATTGGACTATAAGAAGCTACATGATGAGACTTATGGAAGTATTTCTTCTGACTCAAGTGATGATGATGAGTGGAATGATATTGCTGCTCCGGGAAAGAAAAGTTGTCGAATAGTCTCTCCAGCTGAACAAATTGGAAATTCTTCAGTGGTAAAGAAGGGATATAAAGTTATGGGTAAGAATTATGTAAAGGGGAGTGCTCATCGCAGACAAACAGTTGACGCGACAAATGATTCTTCGATAAAGGTACAAGAAGGGTCTTCCAAGTCTTGTTCAACTGGTAGAAGAGCCAAATCATCTGCTTACAGTAAACTTGGGGAAGCTGTAGTTCAGAGACTTCGTTTATCATTTGAAGAAAATCAGTACCCTGAAAAACATACAAAAGAAAGTTTGGCTCAAGATCTAGGACTCAGTTTCAAGCAGGTCAGCAAATGGTTTGAAAATACTCGTTGGAGTACTCGTCATCCAACAAATGCACAAGCAAATGGAAACACAAACCCAGATAAATCTGAAAGCCCTCCGAACAAAGTCACTCCAGTGTCTCGCCCAACCAGAGGATTTAAGCCAGAATTGGATCACAGTCTTGGAGATGCCACTCACAACAGTGTTCATCTCATAAAATCTCCTAAAGCCAGTGCTCGTCTCATAAAATCTCCCAAAGCCAGTGTTGTTATTCCACAATGCCAAAGTGGAGATACAAAGGATGGCGTTTTGGTGAGTCATAAATGCACTAAGCAAGAACCTAATTCCATTAAAACCAGAAAGAGAAAAGGTAGATCAGGCGATTTGGCCATTGATAATATTGATGCTAGTACGATAGAGACAAAAAAGCCTCTTGCTGAGTCATCAGAAGCTCATGAAGGTCGAGCTAGTGGTCAGATTAGGACAAGAAAACAGAAAAAGATTGCTTCTTATACTGATGTTAGTAATGTAGAGACTCGGAAACTCCGCTCTGGGTCAAAAAAAGCCAATGAAGATCGAGAAAATCACCAGATTAGGATGAGAAGACGGAAATTGATTGCTTAA 2688 39.29 MDDNRLGDDEGCSTGTTRKLLNNLSELNYHDIQSVQNLTQKTSPEEQTEVRQKILQQTQVEVSEELLSKLSEKNHLSDSEFAQNNPAGVDVIQEFEPHFADCSLEDVLKLPFVDASNSDNQLKSFVEDSINELKTPIKRSAKYSKQVNCQTSKSRRRKYMLRSLGHTDRVLRSRTQGNATASKPSNPVSSVRCEGDGKGRKKERRKKTKVADEFSKIRNCLRYFLNRMGYEQSFIAAYSGEGWKGYSFEKLKPKKELQRATSEIMRRKLKIRDLFKHLDSLCVNGRFPESLFDSEGQIDSEDIFCAICGSKEMSANNDIILCDGACDRGFHQLCLDPPLLNEDIPPDDDGWLCPGCDCKVDCIDLINDAQGTNYSLTDSWENIYPEAAVVVAGQSLDLTLGLPSDDSDDNDFDPHDPDTDEQGDESSPVVSDNNIESEKLVASPKNNQYLGLPSDDSDDDDYNPGAPDTEEKIKSESSSSDFTSDSENLAAIFEDDRPSRNEDDKSTCSHIGIDKKSCRRGLGKHLLNDELSSVLNLEPRNDGLSPIASRRHVERLDYKKLHDETYGSISSDSSDDDEWNDIAAPGKKSCRIVSPAEQIGNSSVVKKGYKVMGKNYVKGSAHRRQTVDATNDSSIKVQEGSSKSCSTGRRAKSSAYSKLGEAVVQRLRLSFEENQYPEKHTKESLAQDLGLSFKQVSKWFENTRWSTRHPTNAQANGNTNPDKSESPPNKVTPVSRPTRGFKPELDHSLGDATHNSVHLIKSPKASARLIKSPKASVVIPQCQSGDTKDGVLVSHKCTKQEPNSIKTRKRKGRSGDLAIDNIDASTIETKKPLAESSEAHEGRASGQIRTRKQKKIASYTDVSNVETRKLRSGSKKANEDRENHQIRMRRRKLIA 895
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19116348 19121492 + Bpe017908.1 Bpe05g00488 104265

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00488 895 PANTHER HOMEOBOX PROTEIN HAT3.1 74 750 - -
Bpe05g00488 895 ProSiteProfiles Zinc finger PHD-type profile. 302 359 IPR019787 -
Bpe05g00488 895 ProSiteProfiles 'Homeobox' domain profile. 650 710 IPR001356 GO:0003677
Bpe05g00488 895 MobiDBLite consensus disorder prediction 194 208 - -
Bpe05g00488 895 SMART PHD_3 304 357 IPR001965 -
Bpe05g00488 895 MobiDBLite consensus disorder prediction 833 848 - -
Bpe05g00488 895 MobiDBLite consensus disorder prediction 851 867 - -
Bpe05g00488 895 Pfam PHD-finger 304 359 IPR019787 -
Bpe05g00488 895 MobiDBLite consensus disorder prediction 622 656 - -
Bpe05g00488 895 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 298 361 IPR013083 -
Bpe05g00488 895 MobiDBLite consensus disorder prediction 404 425 - -
Bpe05g00488 895 MobiDBLite consensus disorder prediction 704 754 - -
Bpe05g00488 895 MobiDBLite consensus disorder prediction 170 189 - -
Bpe05g00488 895 MobiDBLite consensus disorder prediction 165 208 - -
Bpe05g00488 895 CDD PHD_PRHA_like 304 356 IPR045876 -
Bpe05g00488 895 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 74 750 - -
Bpe05g00488 895 MobiDBLite consensus disorder prediction 624 653 - -
Bpe05g00488 895 SUPERFAMILY FYVE/PHD zinc finger 294 362 IPR011011 -
Bpe05g00488 895 MobiDBLite consensus disorder prediction 704 733 - -
Bpe05g00488 895 MobiDBLite consensus disorder prediction 400 508 - -
Bpe05g00488 895 SMART HOX_1 648 714 IPR001356 GO:0003677
Bpe05g00488 895 MobiDBLite consensus disorder prediction 868 889 - -
Bpe05g00488 895 Gene3D - 653 720 - -
Bpe05g00488 895 CDD homeodomain 664 710 IPR001356 GO:0003677
Bpe05g00488 895 MobiDBLite consensus disorder prediction 830 895 - -
Bpe05g00488 895 ProSitePatterns 'Homeobox' domain signature. 685 708 IPR017970 GO:0000981|GO:0006355
Bpe05g00488 895 ProSitePatterns Zinc finger PHD-type signature. 305 356 IPR019786 -
Bpe05g00488 895 MobiDBLite consensus disorder prediction 426 453 - -
Bpe05g00488 895 MobiDBLite consensus disorder prediction 490 508 - -
Bpe05g00488 895 Pfam Homeodomain 663 705 IPR001356 GO:0003677
Bpe05g00488 895 SUPERFAMILY Homeodomain-like 659 712 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00488 - - - qlo:115967836 656.751
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe05g00488 Bpe07g00262 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00488 Bpe-Chr5:19116348 Bpe05g00903 Bpe-Chr5:22054738 2.72E-06 dispersed
Bpe02g02070 Bpe-Chr2:22216373 Bpe05g00488 Bpe-Chr5:19116348 9.28E-51 transposed
Bpe05g00488 Bpe-Chr5:19116348 Bpe07g00262 Bpe-Chr7:1883715 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g656 Blo02g00944 Blo03g00085 Bda06g01216 Bda08g00666 Bpe07g00262 . Bma05g00672 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1009 Cone10ag1026 . . . . . . . . . Bpe05g00488 . . . Cmo04g00496 Cmo16g00355 . . . . Cpe14g00278 Cpe01g00416 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003741 2 4 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21437 PF00628 PHD 1.40E-11 CL0390 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00488 Bpe_Chr05 FPKM 48.861763 51.909481 32.698376 31.627392 19.541983 21.851116 20.857435 54.042351 50.357452 53.911736