Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00508 ATGGCTACTAGGTTCTTAGTTTCAAAACTATTCCCCAGAAACCCCTTTCCATTTCCCAAACCTTCGTCTCAAAGTTCTCTTCCTCTCTCTGGAATCCTCAGAAAGTTACACTCAGTTGTTGCCCCGCCGTGGCGTGACCGTGAGTCTCAGAAAATTCACCCTGCTCATTCCAGGGGATTGGTATCTGCTCCTGAATTCGATGTTGGGGAATCTGGTTCGGCTTCTCTCTGCACTGATAGTCGTGTTCCCGCCACTGTGATTACTGGCTTTCTCGGCTCCGGAAAGACAACTCTGCTGAATCATATTCTAACATCTCAACACGGGAAGAGGATTGCTGTGATAGAAAATGAGTTTGGTGAGGTAGATATTGATGGATCTTTGGTTGCAAGCCATTCTTCTGTGACAGAAGACATTATTATGGTCAATAATGGTTGCCTTTGTTGCACCGTGAGAGGAGATCTGGTCAAAATGCTCTTGAAGCTGGTAAAGAATAAACGAGACAAATTCGACCATATTGTTATTGAAACTACAGGTCTTGCTAAACCAGCTCCAGTCATAGAAACTTTTTGTACAGATGAACTGGTTTCACAATATGTAAAATTGGACGGAGTTGTTACTCTTGTTGATTCCAAGCATGCAATGAAACATCTAAATGAAGTGAAGCCAAGATTTGTGGTGAATGAGGCTGTTGAGCAAGTGGCATATGCTGATCGAATAGTTATGAATAAGATAGATTTGGTGTCTGAAATAGAACTGGAGATGCTCATGCATAGGATAAAGCACATTAATTCTATGGCTCAAATTAAGCTAGCTAAATTTGGATCTGTAGACATGGACTTCGTTTTGGGAGTGGGAGGATATGATCTGGAGAGACTTGATTCTGAAATTGAAGTCAACAATTCTTGTGCTGGAACCCACATACATGAAGTCAGAGATGAGCACAAAAAAGGACATTCTCATGACCATTTACATGATTCCACCGTCTCCAGTGTTAGTATCGTTTCTGAAGGGACACTTGATCTCGATGAGGTCGATGATTGGCTTGAAAGACTGATCGAAGAGAAAGGAGAGGATTTGTACAGAATGAAAGGAATTTTGTCCATTGCTAATTCCGAGCAGCGATACATTTTTCAGGGGGTACAATCGATATTGGATGGTTGCCCTGGAAAACCATGGGGGCCAGAAGAGAAGAGGATAAACAAATTAGTCTTTATTGGAAGAAATCTAGAGGAAACTGCTTTGCGAAAAGGATTTAAAGGCTGTTTGGTATGA 1272 41.75 MATRFLVSKLFPRNPFPFPKPSSQSSLPLSGILRKLHSVVAPPWRDRESQKIHPAHSRGLVSAPEFDVGESGSASLCTDSRVPATVITGFLGSGKTTLLNHILTSQHGKRIAVIENEFGEVDIDGSLVASHSSVTEDIIMVNNGCLCCTVRGDLVKMLLKLVKNKRDKFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVVTLVDSKHAMKHLNEVKPRFVVNEAVEQVAYADRIVMNKIDLVSEIELEMLMHRIKHINSMAQIKLAKFGSVDMDFVLGVGGYDLERLDSEIEVNNSCAGTHIHEVRDEHKKGHSHDHLHDSTVSSVSIVSEGTLDLDEVDDWLERLIEEKGEDLYRMKGILSIANSEQRYIFQGVQSILDGCPGKPWGPEEKRINKLVFIGRNLEETALRKGFKGCLV 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19265655 19271077 - Bpe017926.1 Bpe05g00508 104285

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00508 423 CDD CobW-like 83 285 - -
Bpe05g00508 423 Pfam CobW/HypB/UreG, nucleotide-binding domain 83 268 IPR003495 -
Bpe05g00508 423 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 82 297 IPR027417 -
Bpe05g00508 423 PANTHER COBW-RELATED 45 423 - -
Bpe05g00508 423 PANTHER OSJNBA0083N12.6 PROTEIN 45 423 - -
Bpe05g00508 423 SMART CobW_C_3 328 422 IPR011629 -
Bpe05g00508 423 Gene3D - 308 422 IPR036627 -
Bpe05g00508 423 Gene3D - 80 287 IPR027417 -
Bpe05g00508 423 SUPERFAMILY Hypothetical protein YjiA, C-terminal domain 328 422 - -
Bpe05g00508 423 Pfam Cobalamin synthesis protein cobW C-terminal domain 328 422 IPR011629 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00508 - - - jre:109014260 630.172
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00587 Bpe-Chr3:26124025 Bpe05g00508 Bpe-Chr5:19265655 6.84E-146 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g820 . . . Bda08g00649 Bpe05g00508 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma05g00693 . . . . . . . . . . . . . . . . . . . . . . . . . . Chy06g02189 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002951 2 0 2 3 2 1 2 1 1 2 1 1 2 2 2 2 1 2 2 1 2 1 2 2 2 1 2 4 4 2 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00508 Bpe_Chr05 FPKM 2.054581 2.595416 0.971751 2.169241 3.67745 3.687303 4.509448 0.749399 1.281164 1.163379