Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00534 CGATCCATCGGATCAACGATGCCGGTGGCTGCTTCCGCCATTTACTTCCTTAATCTCCGAGGCGATGTCCTCATCAACCGCCTCTATCGCGACGATGCTTCGCATTGGTGGGTCATAAACCTTTTCCGTTATATTTCTCTTCACCTTGTGCTTTTTCGCTCTGCTGACTCATTTTTTTCCAGGGGAAATATGGTGGATGCTTTTCGAACACATATAATGCAAACAAAAGAACTTGGTACCTGTCCAGTACGTCAGATTGGCAGTTGCTCTTTCTTTTATATGAGAATCAGCAATGTCTATATCGTGATCGTTGTCAGCAGCAATGCAAATGTGGCATGTGCGTTCAAATTTGTTGTTGAGGCTGTTGCACTGTTCAAATCCTATTTTGGTGGGGCTTTTGATGAGGATGCCATCCGTAATAATTTTGTTCTAATATATGAGCTTTTGGATGAAATCATGGATTTTGGTTATCCACAAAACCTTTCTCCTGAAATTTTAAAACTTTACATCACACAAGAAGGAGTTCGCTCACCATTCTCATCCAAGGTTGCAGACAAGCCTGTCCCAAATGCAACCTTACAAGTTACTGGTGCAGTTGGTTGGCGGAGAGAAGGTCTTGTGTATAAAAAGAATGAGGTTTTTCTTGATATTATCGAAAGTGTCAATCTTCTTATGTCTTCAAAAGGTGGTGTTTTACGTTGTGATGTCACGGGGAAGGTCCTCATGAAATGCTTTCTTTCTGGTATGCCTGATTTGAAGTTGGGTTTGAATGATAAAATTGGTCTTGAGAAAGAGGCGCAGCTGAAGTCTCGCCCGACTAAAAGTGGTAAAACTATCGAGCTTGACGATGTAACGTTCCATCAATGTGTAAATTTGACAAGGTTTAACTCAGAGAAGACGGTTAGTTTTGTGCCACCGGATGGTGAATTTGAATTGATGAAATATCGTATCACTGAGGGTGTTAATCTTCCTTTCCGAGTTTTGCCAACAATTAAGGAGCTTGGTCGAACAAGCATGGAAGTTAATGTTAAGGTAAAAAGTGTCTTTGGTGCAAAAATGTTTGCTCTTGGGGTTGTCATCAAAGTCCCTGTACCAAAACAAACAGCAAAGGCAAGTTTCCAAGTGACTTCAGGTCGAGCAAAGTACAATCCCGCTATAGACTGCCTTGTTTGGAAAATTCGTAAATTTCCAGGAGAAACCGAACCAAATATGAGTGCTGAAGTTGAGCTGATTTCCACCATGACGGAAAAGAAGTCTTGGACTAGACCCCCTATTCAGATGGAATTCCAGGTCCCCATGTTCACCGCTTCTGGTTTACGTGTTAGATTCTTGAAGGTATGGGAGAAGAGCGGGTATAACACAGTGGAGTGGGTTCGATATATTACCAAAGCCGGATCATACGATATTAGGTGCTAA 1416 41.95 RSIGSTMPVAASAIYFLNLRGDVLINRLYRDDASHWWVINLFRYISLHLVLFRSADSFFSRGNMVDAFRTHIMQTKELGTCPVRQIGSCSFFYMRISNVYIVIVVSSNANVACAFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKVADKPVPNATLQVTGAVGWRREGLVYKKNEVFLDIIESVNLLMSSKGGVLRCDVTGKVLMKCFLSGMPDLKLGLNDKIGLEKEAQLKSRPTKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKELGRTSMEVNVKVKSVFGAKMFALGVVIKVPVPKQTAKASFQVTSGRAKYNPAIDCLVWKIRKFPGETEPNMSAEVELISTMTEKKSWTRPPIQMEFQVPMFTASGLRVRFLKVWEKSGYNTVEWVRYITKAGSYDIRC 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19512328 19518687 + Bpe017951.3 Bpe05g00534 104311

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00534 471 Gene3D Mu homology domain, subdomain B 323 470 - -
Bpe05g00534 471 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 199 470 IPR036168 -
Bpe05g00534 471 CDD AP2_Mu_N 12 177 IPR043532 -
Bpe05g00534 471 ProSitePatterns Clathrin adaptor complexes medium chain signature 1. 199 219 IPR018240 GO:0006886|GO:0016192|GO:0030131
Bpe05g00534 471 Pfam Adaptor complexes medium subunit family 200 471 IPR028565 -
Bpe05g00534 471 ProSiteProfiles Mu homology domain (MHD) profile. 210 470 IPR028565 -
Bpe05g00534 471 CDD AP-2_Mu2_Cterm 208 470 IPR043512 -
Bpe05g00534 471 PRINTS Clathrin coat assembly protein signature 21 41 IPR001392 GO:0006886|GO:0016192|GO:0030131
Bpe05g00534 471 PRINTS Clathrin coat assembly protein signature 390 401 IPR001392 GO:0006886|GO:0016192|GO:0030131
Bpe05g00534 471 PRINTS Clathrin coat assembly protein signature 350 365 IPR001392 GO:0006886|GO:0016192|GO:0030131
Bpe05g00534 471 PRINTS Clathrin coat assembly protein signature 281 308 IPR001392 GO:0006886|GO:0016192|GO:0030131
Bpe05g00534 471 Gene3D - 11 178 - -
Bpe05g00534 471 PANTHER AP-2 COMPLEX SUBUNIT MU 60 471 - -
Bpe05g00534 471 Gene3D Mu homology domain, subdomain B 207 466 - -
Bpe05g00534 471 PANTHER AP COMPLEX SUBUNIT MU 60 471 - -
Bpe05g00534 471 SUPERFAMILY SNARE-like 12 175 IPR011012 -
Bpe05g00534 471 PIRSF AP_complex_mu 10 471 IPR001392 GO:0006886|GO:0016192|GO:0030131
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00534 K11826 AP2M1; AP-2 complex subunit mu-1 - pvy:116110752 816.994
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00534 Bpe-Chr5:19512328 Bpe11g01791 Bpe-Chr11:14237476 4.92E-117 dispersed
Bpe05g00534 Bpe-Chr5:19512328 Bpe07g00205 Bpe-Chr7:1421310 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g638 Blo02g00997 . . . Bpe05g00534 . . . . . . . . . . . Cpe05g00188 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma05g00385 . . . Cmo19g00479 . . . . . Cpe15g00360 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004704 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 3 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00534 Bpe_Chr05 FPKM 31.422747 33.786968 26.995913 27.250471 21.019562 23.195183 20.694635 22.622705 20.672321 21.235508