Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00540 ATGGCAGAATCGGTGGACCTACCGGGTCGTCTCGGTATCCTCCCTTTCAGAAACAAGGTCCTTCTTCCCGGAGCCATAATTAGAATTCGATGCACTTCGCCGAGCAGTGTGAAGCTGGTGGAGCAGGAGTTATGGCAGCGAGAAGAGAAGGGATTGATTGGTATTCTTCCTGTTCGAGATGCTGCTGAGGCAACAACAATAGATCCTGTTCTATCTCAAGGAGTAGGAAGTGACTCTGGGGAACGGAGCTCAAGAGTTCAAGCTGGCACCGCAGATTCTGAAAGATTTGATGGGAAAAATCAGCAGGAAGCCATTCATTGGCATACAAGGGGAGTTGCTGCTCGTGCCTTACATCTATCTAGAGGAGTGGAGAAACCAAGTGGTAGGGTAACTTATACAGTGGTCCTTGAAGGTTTGTGCAGATTCAGTGTCCAGGAACTCAGCACCAGAGGAACATATTATGTTGCACGGATATCTCCTCTTGAAATGACAAAGGCAGAGATGGAACAGGTGGAGCAAGATCCTGACTTCACTTCATTGTCTCGCCTGTTCAAAGCCACTGCTATGGAGCTGATTTCTGTTCTTGAGCAGAAGAAAAAAACTGGAGGAAGAACAAAGGTTCTTTTGGAGACAGTTCCGGTACATAAATTGGCTGACATTTTTGTTGCTAGCTTTGAAATAAGCTTTGAGGAACAGTTGTCCATGTTGGATTCCATAGATTTGAAATCGATACGTGTTGCTGAAAAGATAACTCAAAAGGTCGAGGGCCAGCTATCTAAATCACAGAAAGAGTTTCTCTTGCGCCAGCAGATGAGAGCGATAAAAGAGGAGCTTGGCGACGATGATGATGAGGATGACTTAGCTGCTTTAGAAAGAAAGATGCAAAGTGCTGGGATGCCTTCAAATATATGGAAGCATGCACAAAGGGAGTTAAGGAGCCTGAAAAAGATGCAGCCTCAGCAGCCTGGATATAACAGTTTACGTGTATACCTGGAGCTTCTTGCTGATCTGCCTTGGATAAAGGCTACTGAGGAACATGAGTTAGACTTGAAAGCTGCAAGAGAACGTCTTGACAATGATCATTATGGTTTAGTCAAGGTCAAGCAGAGGATCATAGAATATCTGGCTGTTCGCAAGCTTAAGCCTGATGCAAGAGGCCCAGTGTTGTGCTTTGTTGGCCCACCTGGTGTTGGGAAAACATCTTTGGCATCATCCATTGCTGCTGCATTGGGTAGAAAATTTGTACGCATATCCCTGGGAGGAGTGAAGGACGAAGCTGACATTAGGGGGCATAGAAGAACATATATTGGAAGTATGCCAGGGCGTCTCATTGATGGATTGAAGAGGGTATCTGTATACAATCCAGTTATGCTGCTAGATGAGATTGATAAGACAGGTTCTGATGTGCGTGGTGATCCTGCTTCAGCTCTACTGGAGGTTCTTGATCCTGAGCAGAACAAAAATTTTAATGACCAGTTTGACAGCTATTTGAACGTTCCATTTGACCTCTCAAAGGTTGTATTTGTGGCAACTGCGAATAGAATGCAGCCTATTCCTCCACCTCTCCTTGATAGGATGGAAGTCATTGAGCTTCCTGGGTATACACAGGAGGAAAAACTTAAGATTGCCATGCGACATTTAATTCCACGAGTTCTGGATCAGCATGGATTGAATTCTGAGTTTCTTGAAATTCCGGAGGCTATGGTGAAACTTGTCATTCAGCGGTACACTAGAGAGGCTGGTGTTCGGAACCTTGAGAGAAATTTGGCTGCCTTGGCTCGTGCAGCAGCAGTTAGAGTTGTGGAGCAAGAAGGTGCTTTTCCCATTAGTAAAGATGTGCTCCATCTTGCTACACCGCTGCTGGAAAGTAGACTGGCAGATGGAGCAGAAGTAGAAATGGAGGTCCTTCCCATTGGAGCAAACAATCACGAGATATCAAACACAATTTCTCCATTGATAGTGGATGAGGCCATGCTGGAAAAAATTCTGGGGCCTCCAAGGTTTGACGATAGAGAAGCAGCAGAGAGAGTCGCAACTCCCGGGGTGTCTGTTGGGCTTGTTTGGACGTCTTTCGGGGGAGAGGTTCAGTTTGTAGAGGCGACAGCGATGGTCGGAAAGGGTGACTTACATCTCACTGGCCAACTTGGTGATGTCATCAAAGAATCTGCACAAATAGCTCTGACATGGGTAAGAGCCAGAGCAACCGATCTTAATTTGGTAGCTGCTGGAGTAACCAATATCTTGGAGGGCAGAGATATTCACATTCATTTTCCTGCTGGTGCAGTACCAAAGGACGGCCCTTCAGCTGGTGTGACTTTGGTGACTGCTCTAGTCTCTTTGCTCAGTCATAAAAAAGTGAGAGCAGACACTGCAATGACAGGAGAGATGACTCTGAGGGGCCTTGTGCTACCTGTTGGTGGTATAAAGGACAAGATATTGGCAGCACATCGCTACGGTATTAAGAGAGTCATTCTGCCAGAAAGAAACTTGAAAGACTTGGTTGAAGTTCCATCAGCTGTGCTTGCCAATTTAGAGATACTCCTCGCAAAACGAATGGAAGACGTGTTGGATCAGGCATTTGAAGGTGGTTGTCCATGGAGACAACACTCAAAACTATGA 2619 45.86 MAESVDLPGRLGILPFRNKVLLPGAIIRIRCTSPSSVKLVEQELWQREEKGLIGILPVRDAAEATTIDPVLSQGVGSDSGERSSRVQAGTADSERFDGKNQQEAIHWHTRGVAARALHLSRGVEKPSGRVTYTVVLEGLCRFSVQELSTRGTYYVARISPLEMTKAEMEQVEQDPDFTSLSRLFKATAMELISVLEQKKKTGGRTKVLLETVPVHKLADIFVASFEISFEEQLSMLDSIDLKSIRVAEKITQKVEGQLSKSQKEFLLRQQMRAIKEELGDDDDEDDLAALERKMQSAGMPSNIWKHAQRELRSLKKMQPQQPGYNSLRVYLELLADLPWIKATEEHELDLKAARERLDNDHYGLVKVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIAAALGRKFVRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVSVYNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKNFNDQFDSYLNVPFDLSKVVFVATANRMQPIPPPLLDRMEVIELPGYTQEEKLKIAMRHLIPRVLDQHGLNSEFLEIPEAMVKLVIQRYTREAGVRNLERNLAALARAAAVRVVEQEGAFPISKDVLHLATPLLESRLADGAEVEMEVLPIGANNHEISNTISPLIVDEAMLEKILGPPRFDDREAAERVATPGVSVGLVWTSFGGEVQFVEATAMVGKGDLHLTGQLGDVIKESAQIALTWVRARATDLNLVAAGVTNILEGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLLSHKKVRADTAMTGEMTLRGLVLPVGGIKDKILAAHRYGIKRVILPERNLKDLVEVPSAVLANLEILLAKRMEDVLDQAFEGGCPWRQHSKL 872
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19582642 19591582 - Bpe017957.1 Bpe05g00540 104317

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00540 872 MobiDBLite consensus disorder prediction 69 98 - -
Bpe05g00540 872 TIGRFAM lon: endopeptidase La 13 860 IPR004815 GO:0004176|GO:0005524|GO:0006508
Bpe05g00540 872 Gene3D - 679 865 IPR014721 -
Bpe05g00540 872 Gene3D - 289 337 - -
Bpe05g00540 872 PANTHER LON PROTEASE HOMOLOG 2, PEROXISOMAL 1 872 - -
Bpe05g00540 872 PANTHER ATP DEPENDENT LON PROTEASE FAMILY MEMBER 1 872 IPR027065 GO:0004176|GO:0004252|GO:0005524|GO:0030163
Bpe05g00540 872 Gene3D - 2 162 IPR046336 -
Bpe05g00540 872 SMART lon_5 10 253 IPR003111 -
Bpe05g00540 872 Pfam Lon protease (S16) C-terminal proteolytic domain 654 860 IPR008269 GO:0004176|GO:0004252|GO:0006508
Bpe05g00540 872 SUPERFAMILY Ribosomal protein S5 domain 2-like 680 859 IPR020568 -
Bpe05g00540 872 CDD AAA 370 534 - -
Bpe05g00540 872 ProSiteProfiles Lon N-terminal domain profile. 11 254 IPR003111 -
Bpe05g00540 872 SUPERFAMILY PUA domain-like 11 242 IPR015947 -
Bpe05g00540 872 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 792 811 - -
Bpe05g00540 872 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 762 781 - -
Bpe05g00540 872 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 815 833 - -
Bpe05g00540 872 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 680 696 - -
Bpe05g00540 872 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 393 412 - -
Bpe05g00540 872 ProSiteProfiles Lon proteolytic domain profile. 677 862 IPR008269 GO:0004176|GO:0004252|GO:0006508
Bpe05g00540 872 Gene3D - 532 668 - -
Bpe05g00540 872 Gene3D - 350 531 IPR027417 -
Bpe05g00540 872 MobiDBLite consensus disorder prediction 70 90 - -
Bpe05g00540 872 Pfam ATP-dependent protease La (LON) substrate-binding domain 13 242 IPR003111 -
Bpe05g00540 872 PIRSF Lon_proteas 636 863 IPR004815 GO:0004176|GO:0005524|GO:0006508
Bpe05g00540 872 PIRSF Lon_proteas 1 625 IPR004815 GO:0004176|GO:0005524|GO:0006508
Bpe05g00540 872 Gene3D - 174 282 - -
Bpe05g00540 872 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 337 605 IPR027417 -
Bpe05g00540 872 Pfam ATPase family associated with various cellular activities (AAA) 389 529 IPR003959 GO:0005524|GO:0016887
Bpe05g00540 872 ProSitePatterns ATP-dependent serine proteases, lon family, serine active site. 765 773 IPR008268 GO:0004176|GO:0004252|GO:0006508
Bpe05g00540 872 Hamap Lon protease homolog 2, peroxisomal [LONP2]. 3 872 IPR027501 GO:0004252|GO:0006515
Bpe05g00540 872 SMART AAA_5 385 533 IPR003593 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00540 K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] - mnt:21406119 1467.6
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00540 Bpe-Chr5:19582642 Bpe09g00564 Bpe-Chr9:14447248 1.05E-137 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g584 Blo02g01005 . . . Bpe05g00540 . . . Cmo06g00858 Cmo16g01139 . . . . . Cpe14g00900 . Bhi11g00104 . . . . Mch10g1616 . Cla10g00192 Cam10g0198 Cec10g0204 Cco10g0205 Clacu10g0202 Cmu10g1046 Cre10g0452 . . Cone6ag0622 Cone9ag0625 Lsi07g01235 . . Cme06g02505 . . . . . . Bma05g00397 . . . . Cma06g00835 Cma16g01089 . Car16g01031 . . . . . . . . . . . . . . . . . Csa03g00209 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008731 0 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00540 Bpe_Chr05 FPKM 4.323454 4.003042 4.430706 4.268737 5.928188 6.351676 6.239785 5.202172 5.558277 5.940208