Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00559 ATGTTTCAACTGAGTGGTTCCGATTTGGTGCTTCTTGACTCGATTCGCCGGTATTTGTTGGGCGAATCGGACTCTCTGCGAGACGGTAAAGTGATTGTCTCCGGTTCCGGACCTGTTTTCTGTAGGAGCTCCAGTTTCAGTAGCTTCTATCCTTGCCTGACGGAGAATTGGGGGGAGTTGCCGCTTAAAGTGGATGATTCGGAGGATATGGTCCTCGCCGGAGTGCTCCATGAAGCCATTAATGTCGGTTGGGTACCCTCACTTACTTCGTCTTCTCCGGAAATCGGAAATTTTGGAGTGTCTTATGTGAAATCGGAGCCGGAGATCTTTCCCCCACTGGACCAGTCACCGGCGCTGGAGAAGGTACAGCCGGTACGGGCAGTGGTTCCTCCAAGAGGAAAGCATTACCGGGGCGTTCGGCAGCGGCCGTGGGGGAAATTCGCGGCGGAAATTCGGGACCCGGCGAAGAATGGAGCTAGAGTTTGGCTCGGAACCTTTGAGACGGCCGAGGACGCAGCTTTAGCTTACGACCGCGCGGCGTATCGGATGCGCGGCTCAAAAGCTTTACTCAACTTTCCTCTCCGGGTTAACTCTGGTGAACCCGACCCGATTAGAGTCACTTCGAAGCGTTCTTCGCCGGAGCCATCATCCCCCGGGGAAAGCGGGGCGTCGCCTAAAAGGCGGAAGAAGGCGAACGTCTCGTCGGATTCGCCGATATCGCCTCCTCAAGAGGGGCAAATAAGTAAAACAGCTATGGGGGAGCAAATACATGCGGTAAAGCATACAAAGGCTTGCACACTTGGCGAAGAACTATTGGTTGTCTAG 825 54.42 MFQLSGSDLVLLDSIRRYLLGESDSLRDGKVIVSGSGPVFCRSSSFSSFYPCLTENWGELPLKVDDSEDMVLAGVLHEAINVGWVPSLTSSSPEIGNFGVSYVKSEPEIFPPLDQSPALEKVQPVRAVVPPRGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSKALLNFPLRVNSGEPDPIRVTSKRSSPEPSSPGESGASPKRRKKANVSSDSPISPPQEGQISKTAMGEQIHAVKHTKACTLGEELLVV 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19748914 19749738 - Bpe017975.1 Bpe05g00559 104336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00559 274 CDD AP2 134 193 IPR001471 GO:0003700|GO:0006355
Bpe05g00559 274 SUPERFAMILY DNA-binding domain 135 195 IPR016177 GO:0003677
Bpe05g00559 274 Gene3D AP2/ERF domain 134 196 IPR036955 GO:0003700|GO:0006355
Bpe05g00559 274 Pfam AP2 domain 135 185 IPR001471 GO:0003700|GO:0006355
Bpe05g00559 274 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1-RELATED 31 231 - -
Bpe05g00559 274 MobiDBLite consensus disorder prediction 199 254 - -
Bpe05g00559 274 MobiDBLite consensus disorder prediction 234 250 - -
Bpe05g00559 274 PANTHER DNA-BINDING DOMAIN 31 231 IPR044808 GO:0003700|GO:0009873
Bpe05g00559 274 ProSiteProfiles AP2/ERF domain profile. 135 193 IPR001471 GO:0003700|GO:0006355
Bpe05g00559 274 PRINTS Ethylene responsive element binding protein signature 159 175 IPR001471 GO:0003700|GO:0006355
Bpe05g00559 274 PRINTS Ethylene responsive element binding protein signature 136 147 IPR001471 GO:0003700|GO:0006355
Bpe05g00559 274 SMART rav1_2 135 199 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00066 Bpe-Chr3:1036893 Bpe05g00559 Bpe-Chr5:19748914 1.48E-49 dispersed
Bpe03g00368 Bpe-Chr3:9705570 Bpe05g00559 Bpe-Chr5:19748914 2.62E-51 dispersed
Bpe05g00559 Bpe-Chr5:19748914 Bpe14g00816 Bpe-Chr14:6177253 1.15E-28 dispersed
Bpe13g00562 Bpe-Chr13:12823129 Bpe05g00559 Bpe-Chr5:19748914 3.22E-26 dispersed
Bpe05g00559 Bpe-Chr5:19748914 Bpe05g00560 Bpe-Chr5:19754786 5.97E-30 tandem
Bpe07g00998 Bpe-Chr7:15666047 Bpe05g00559 Bpe-Chr5:19748914 9.82E-30 transposed
Bpe08g00819 Bpe-Chr8:10295982 Bpe05g00559 Bpe-Chr5:19748914 6.82E-91 transposed
Bpe04g01040 Bpe-Chr4:7531396 Bpe05g00559 Bpe-Chr5:19748914 1.92E-33 wgd
Bpe05g00559 Bpe-Chr5:19748914 Bpe05g01069 Bpe-Chr5:23190849 5.87E-32 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21447 PF00847 AP2 1.10E-14 CL0081 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00559 K09286 - csv:101203663 306.219