Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00564 ATGAGAGCTGCTAACGAAAATGATCGTCTGGGTTTGAGTTTGAGCTTGTCTTTTCCTCAGAATCCCCGCTTCGGAGTTTGTTCTTCTTCATCTCCTTCGGGTTTTTGTTCTGATTTTCAGAAACCTTTTTGGAGCGACCCTAGCTCTCCTTCTTCCGACCGGAATAATTGTGATACGTCCCGAGCGGAGAAACGATCTTTTCTCCGAGGTATTGACGTGAACCAGCTGCCGTCTTCGGGGGACTGCGAGGAGGAAGCCGGCGTATCGAGCCCCAACAGCACGGTGTCGAGCGTTAGCGGAAAGAGAAGCGAGAGAGAACCAAATGGAGAAGAGCTCGACCTAGATCGAACTTGTTCTCGAGGAAATAGTGATGAAGAAGACGGCGAAACATCGAGAAAGAAGCTCAGGCTCTCCAAAGACCAGTCCGCCATTTTAGAAGAGAGCTTCAAAGAGCACAACACTCTTAACCCAAAGCAGAAGCTAGCGTTGGCCAAACAGCTGGGTCTCCGGCCGAGACAAGTAGAAGTCTGGTTTCAGAACAGAAGGGCAAGAACGAAGCTGAAGCAGACGGAGGTTGATTGCGAGTTTTTGAAAAGATGTTGCGAGAATCTGACGGAGGAGAACAGGCGGTTGCAAAAAGAAGTACAAGAGCTTAGAGCACTGAAACTTTCCCCGCAACTCTACATGCAAATGACCCCACCCACCACCCTCACCATGTGTCCCTCGTGCGAGCGTGTGGGGGTCCCACCAACGTCCTCCTCCGCGCGGGCCCACCCTCGGCCCATCCAAGTCAGCCCATGGTCTGTTTCCGGCCCAATAGCCCACCCGAGAATCCACCCCAAACCATAA 849 52.18 MRAANENDRLGLSLSLSFPQNPRFGVCSSSSPSGFCSDFQKPFWSDPSSPSSDRNNCDTSRAEKRSFLRGIDVNQLPSSGDCEEEAGVSSPNSTVSSVSGKRSEREPNGEELDLDRTCSRGNSDEEDGETSRKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQLYMQMTPPTTLTMCPSCERVGVPPTSSSARAHPRPIQVSPWSVSGPIAHPRIHPKP 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19771855 19773085 - Bpe017980.1 Bpe05g00564 104341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00564 282 MobiDBLite consensus disorder prediction 1 20 - -
Bpe05g00564 282 SUPERFAMILY Homeodomain-like 121 189 IPR009057 -
Bpe05g00564 282 Pfam HD-ZIP protein N terminus 6 106 IPR006712 GO:0005634
Bpe05g00564 282 PRINTS Lambda-repressor HTH signature 168 184 IPR000047 GO:0003677
Bpe05g00564 282 PRINTS Lambda-repressor HTH signature 159 168 IPR000047 GO:0003677
Bpe05g00564 282 ProSitePatterns 'Homeobox' domain signature. 163 186 IPR017970 GO:0000981|GO:0006355
Bpe05g00564 282 PANTHER - 7 268 - -
Bpe05g00564 282 MobiDBLite consensus disorder prediction 85 102 - -
Bpe05g00564 282 MobiDBLite consensus disorder prediction 39 137 - -
Bpe05g00564 282 Pfam Homeobox associated leucine zipper 188 222 IPR003106 GO:0006355|GO:0043565
Bpe05g00564 282 Pfam Homeodomain 132 186 IPR001356 GO:0003677
Bpe05g00564 282 Coils Coil 187 224 - -
Bpe05g00564 282 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 7 268 - -
Bpe05g00564 282 MobiDBLite consensus disorder prediction 103 137 - -
Bpe05g00564 282 CDD homeodomain 132 189 IPR001356 GO:0003677
Bpe05g00564 282 ProSiteProfiles 'Homeobox' domain profile. 128 188 IPR001356 GO:0003677
Bpe05g00564 282 MobiDBLite consensus disorder prediction 250 282 - -
Bpe05g00564 282 Gene3D - 136 186 - -
Bpe05g00564 282 SMART halz 188 231 IPR003106 GO:0006355|GO:0043565
Bpe05g00564 282 SMART HOX_1 130 192 IPR001356 GO:0003677
Bpe05g00564 282 MobiDBLite consensus disorder prediction 39 56 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00564 Bpe-Chr5:19771855 Bpe10g00572 Bpe-Chr10:12688150 1.48E-73 dispersed
Bpe08g00716 Bpe-Chr8:8561256 Bpe05g00564 Bpe-Chr5:19771855 2.33E-37 dispersed
Bpe05g00564 Bpe-Chr5:19771855 Bpe04g01452 Bpe-Chr4:21149666 4.29E-76 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21449 PF04618 HD-ZIP_N 2.70E-24 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00564 K09338 - jre:109005254 382.489