Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00566 ATGGACTTCGTTGAACTTCTCTCCAATTCTTCTTCCTCCTCTTCCTCAGACGAAATCTCAGAGCTCAAAGATGGTGACCAGGTTAAGGAAAAGCTTAACTCTACCAATGGTAGAACGCATCCTGTTTATCGCGGAGTGAGAATGCGTCAGTGGGGAAAATGGGTATCCGAAATCAGGGAACCGAGGAAGAAATCTAGAATTTGGCTCGGAAGTTACTCGTCGCCGGACATGGCAGCTCGAGCTCATGATGTCGCAGCGAGAGCAATTAAGGGTCGCTCGGCTTACCTCAACTTCCCCGAGCTAGCTCACCGACTTCCGACTCCGGCGACCTTGTCACCGAAGGATATTCAAGCCGCTGCGGCGAAAGCAGCCTTTCTTCGCTGCGAAGAGGCGGAGCTCCGGCGAAGGGAGCTTGACTTATCAACAATGGCGTCTTCTGATGAAACCCGAGAGGAATCTTCTGCCGCTTGTTCGTCTCTGAGGGAGAAAGACGACGCCATTTTCGACCTCCCTGATCTCTTCCTTGAACAGAATAGTGAAGCGTCTATAAAGCTGACCCACCATTGGTCGCCGTTGCATTTGCTTGGAGCTGAAGAGCTATGGGAATATTGTTAA 615 50.89 MDFVELLSNSSSSSSSDEISELKDGDQVKEKLNSTNGRTHPVYRGVRMRQWGKWVSEIREPRKKSRIWLGSYSSPDMAARAHDVAARAIKGRSAYLNFPELAHRLPTPATLSPKDIQAAAAKAAFLRCEEAELRRRELDLSTMASSDETREESSAACSSLREKDDAIFDLPDLFLEQNSEASIKLTHHWSPLHLLGAEELWEYC 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19796795 19797409 + Bpe017982.1 Bpe05g00566 104343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00566 204 SUPERFAMILY DNA-binding domain 42 100 IPR016177 GO:0003677
Bpe05g00566 204 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Bpe05g00566 204 Gene3D AP2/ERF domain 42 100 IPR036955 GO:0003700|GO:0006355
Bpe05g00566 204 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF043 13 182 - -
Bpe05g00566 204 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Bpe05g00566 204 MobiDBLite consensus disorder prediction 1 18 - -
Bpe05g00566 204 PRINTS Ethylene responsive element binding protein signature 81 101 IPR001471 GO:0003700|GO:0006355
Bpe05g00566 204 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Bpe05g00566 204 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 13 182 - -
Bpe05g00566 204 MobiDBLite consensus disorder prediction 19 33 - -
Bpe05g00566 204 Coils Coil 116 136 - -
Bpe05g00566 204 Pfam AP2 domain 41 91 IPR001471 GO:0003700|GO:0006355
Bpe05g00566 204 MobiDBLite consensus disorder prediction 1 39 - -
Bpe05g00566 204 CDD AP2 43 101 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00566 Bpe-Chr5:19796795 Bpe08g00494 Bpe-Chr8:3241344 4.31E-42 dispersed
Bpe14g00516 Bpe-Chr14:4538438 Bpe05g00566 Bpe-Chr5:19796795 9.86E-39 dispersed
Bpe15g00328 Bpe-Chr15:14794749 Bpe05g00566 Bpe-Chr5:19796795 3.16E-24 dispersed
Bpe04g01036 Bpe-Chr4:7491466 Bpe05g00566 Bpe-Chr5:19796795 1.29E-36 wgd
Bpe05g00566 Bpe-Chr5:19796795 Bpe05g01071 Bpe-Chr5:23220795 2.71E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21451 PF00847 AP2 1.60E-11 CL0081 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00566 - - twl:119984691 178.718