Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00576 ATTGAGAAGGTGGTGGTGCCGGCGACGAAGCCGTACATCACGTTCGAAGGGGCGGGGAGAGGGTCGACGGTGATAGAGTGGCACGACAGGGCCGGCGACCGTGGTCCAAATGGGCAGCAGCTGCGTACTTACAGAACAGCTTCTGTCACTGTCTTTGCCAATTACTTCTCTGCCAGAAACATCGGCTTCAAGAATACTGCTCCGGCACCAATGCCGGGAATGCAAGGGTGGCAGGCGGCGGCGTTTCGTATCTCCGGTGACAAAGCGTATTTTTCCGGCTGCGGGTTTTACGGGGCTCAAGACACTCTTTGTGATGACGCCGGCCGCCATTACTTCAAGGATTGTTACATTGAAGGTTCCATCGACTTCATCTTCGGGAATGGCCGATCTATGTACAAAAACTGTGAGCTACACTCAATAGCGACGAGATTCGGGTCAATAGCGGCCCAAGACAGAAACTCGCCCGACGAGAAAACGGGTTTTGCTTTCGTGGGTTGCAAGGTGACGGGTACTGGGCCTATTTATGTGGGTCGGGCCATGGGCCAATACTCTCGGATTGTGTACGCCTACACTTTCTTTGACGACGTGGTGGCAGATGGCGGCTGGGATGACTGGGACCACAGGCATAATGGTAATTTGGGTTGGTGCAGGACTGTATTTTTTGGAGTGTACAAGTGCTGGGGGCCAGGAGCAAGAGCAGTGGGCGGGCAGGGGGTGTCTTGGGCGCGGGAGCTGGATTTTGAGTCGGCGCATCCGTTTCTTAGGAAGAGCTTCGTCAATGGAAGACACTGGATTGCACCCTCGGATGCTTAG 813 54.86 IEKVVVPATKPYITFEGAGRGSTVIEWHDRAGDRGPNGQQLRTYRTASVTVFANYFSARNIGFKNTAPAPMPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKDCYIEGSIDFIFGNGRSMYKNCELHSIATRFGSIAAQDRNSPDEKTGFAFVGCKVTGTGPIYVGRAMGQYSRIVYAYTFFDDVVADGGWDDWDHRHNGNLGWCRTVFFGVYKCWGPGARAVGGQGVSWARELDFESAHPFLRKSFVNGRHWIAPSDA 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19865024 19866447 - Bpe017991.1 Bpe05g00576 104353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00576 270 SUPERFAMILY Pectin lyase-like 2 267 IPR011050 -
Bpe05g00576 270 Pfam Pectinesterase 2 261 IPR000070 GO:0030599|GO:0042545
Bpe05g00576 270 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 2 270 - -
Bpe05g00576 270 Gene3D - 1 269 IPR012334 -
Bpe05g00576 270 ProSitePatterns Pectinesterase signature 2. 117 126 IPR033131 -
Bpe05g00576 270 PANTHER PECTINESTERASE 2 270 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00576 Bpe-Chr5:19865024 Bpe08g01099 Bpe-Chr8:13037297 1.93E-81 dispersed
Bpe05g00576 Bpe-Chr5:19865024 Bpe04g01561 Bpe-Chr4:21946348 1.40E-79 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00576 - - vvi:100259241 493.041