Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00579 ATGGCGGTTAATGTTATTGCTTCGGCCTGTATCTTCTGCCAGATCGCCTCCAATTCTACGCCGACTACTCTCCTCCATTCTGATGAGAGGGTTATTGCTTTCGAGGATATCAGCCCTTCTGCTTCTAGGCATTACTTGGTGATTCCCCTGAAGCACATTCCAACGATTAATGCTCTTCGAAGGAGAACTGAGGATTATAACTTAGTCAGCCACATGTTGGAGGTGGGGAAAATCTTGTTGCAGAAAGACGCTCCTCACTGCAATGTGTTCAGATTTGGATTCCATCAACCTCCGATGAATAGCGTTAATCACCTCCACCTTCACTGTTTTGCACTACCCTACATACCCAGATGGAAATCTCTAAAATACTTGTCTTTAGGACCAATTGGCTTCCTGGAAGCTGAGAAACTACTGGAAAGAATAAAGCCTTGA 432 44.68 MAVNVIASACIFCQIASNSTPTTLLHSDERVIAFEDISPSASRHYLVIPLKHIPTINALRRRTEDYNLVSHMLEVGKILLQKDAPHCNVFRFGFHQPPMNSVNHLHLHCFALPYIPRWKSLKYLSLGPIGFLEAEKLLERIKP 143
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19883883 19885370 + Bpe017994.1 Bpe05g00579 104356

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00579 143 PANTHER APRATAXIN-RELATED 8 142 - -
Bpe05g00579 143 PANTHER HISTIDINE TRIAD NUCLEOTIDE-BINDING PROTEIN 3 8 142 - -
Bpe05g00579 143 Gene3D - 4 116 IPR036265 -
Bpe05g00579 143 ProSiteProfiles HIT domain profile. 11 123 IPR011146 GO:0003824
Bpe05g00579 143 Pfam Scavenger mRNA decapping enzyme C-term binding 9 114 - -
Bpe05g00579 143 PRINTS Histidine triad family signature 100 110 IPR001310 -
Bpe05g00579 143 PRINTS Histidine triad family signature 11 27 IPR001310 -
Bpe05g00579 143 PRINTS Histidine triad family signature 32 50 IPR001310 -
Bpe05g00579 143 SUPERFAMILY HIT-like 8 131 IPR036265 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00579 K22966 HINT4; sulfate adenylyltransferase (ADP) / adenylylsulfatase [EC:2.7.7.5 3.6.2.1] - jre:108985353 228.409
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g01060 Bpe-Chr3:29847558 Bpe05g00579 Bpe-Chr5:19883883 3.19E-08 dispersed
Bpe05g00579 Bpe-Chr5:19883883 Bpe04g01354 Bpe-Chr4:20074843 8.34E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g536 . . . . Bpe05g00579 . . . . . . Cma15g01124 . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00420 . . . . . . . . . . . . Cmo15g01184 . . . . . Cpe13g00232 Bhi12g00446 . . . . . . Cla01g00396 Cam01g0414 Cec01g0405 Cco01g0426 Clacu01g0415 Cmu01g0396 Cre09g2116 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009294 0 9 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00579 Bpe_Chr05 FPKM 11.946276 15.837263 9.981031 8.169869 7.692364 8.509328 8.694314 8.84264 9.565407 8.241213