Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00583 TTACAAATGGCTTACCAGTTCGCCCTTAGAAGGATCACTTCGTCATGCCTACGCCCTAATGTTGTTTGTCCTATTCGCTCTGCCTCCGTTCTCCGATCCTTTAATACCAACGCTGCTCAAGTCACCGATTACGGTGAAAGCGACCGAGCTGTTGACGTCGATCGCGGGGATCGCTCCGTCTCCCGTCGCCTCGACAGGTTACCTGGCTTCGCAGATGTTTTCGATCCTTTTTCTCCGCCGAGGAGTTTGAGCCAAGTGCTGAATCTGATGGACCAATTCATGGAGGATCCATTTGTAGCGGCATCGAGAGGATCGAGAAGAAGGTGGAACGTGAAGGAAGACGAAGAGGCCTTGTATCTGCGGATGGACATGCCTGGTCTGGGAAAAGAAAACGTCAGGATTTCGGTAGAAAATAACACTCTGATAATCCAAGGAGAAGGAGAGGATAAACCGGAGGAGGGGGAGGGTGGAAGAAGGTACTCCAGCCGGCTGGACTTACCACCGGACGTGTACAAGCTGGACTCCATAAAAGCCGAGATGAAGAATGGAGTGCTGAAAGTTACAGTGACAAAAGTGAAGGAGGAAGAGAGGAAGAATGTGATGGAAGTGAAAATAGAGTAG 621 50.24 LQMAYQFALRRITSSCLRPNVVCPIRSASVLRSFNTNAAQVTDYGESDRAVDVDRGDRSVSRRLDRLPGFADVFDPFSPPRSLSQVLNLMDQFMEDPFVAASRGSRRRWNVKEDEEALYLRMDMPGLGKENVRISVENNTLIIQGEGEDKPEEGEGGRRYSSRLDLPPDVYKLDSIKAEMKNGVLKVTVTKVKEEERKNVMEVKIE 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19907338 19908030 + Bpe017999.1 Bpe05g00583 104360

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00583 206 CDD ACD_sHsps-like 110 191 - -
Bpe05g00583 206 SUPERFAMILY HSP20-like chaperones 83 198 IPR008978 -
Bpe05g00583 206 MobiDBLite consensus disorder prediction 146 162 - -
Bpe05g00583 206 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 100 206 IPR002068 -
Bpe05g00583 206 Gene3D - 67 205 IPR008978 -
Bpe05g00583 206 PANTHER 23.5 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 3 206 IPR044656 -
Bpe05g00583 206 MobiDBLite consensus disorder prediction 143 165 - -
Bpe05g00583 206 Pfam Hsp20/alpha crystallin family 111 205 IPR002068 -
Bpe05g00583 206 PANTHER HEAT SHOCK 22 KDA PROTEIN, MITOCHONDRIAL-LIKE 3 206 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00583 K13993 HSP20; HSP20 family protein - csv:101219106 221.861
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00583 Bpe-Chr5:19907338 Bpe02g00878 Bpe-Chr2:6762368 5.39E-12 dispersed
Bpe03g00608 Bpe-Chr3:26351214 Bpe05g00583 Bpe-Chr5:19907338 1.75E-14 transposed
Bpe10g00774 Bpe-Chr10:13939687 Bpe05g00583 Bpe-Chr5:19907338 2.58E-22 transposed
Bpe05g00583 Bpe-Chr5:19907338 Bpe07g00175 Bpe-Chr7:1189050 5.67E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g532 Blo02g01045 Blo03g00162 . . Bpe05g00583 . . . . . . . . . . Cpe14g00946 . Bhi11g00197 . . . . . . Cla10g00259 Cam10g0265 Cec10g0273 Cco10g0271 Clacu10g0267 Cmu10g1110 Cre10g0518 Cone8ag0395 Cone12ag0380 . . . . . Cme06g02575 . . . . . . . Bma12g00642 . . . . Cma16g01142 . Car16g01081 . . . . . . . . . . . . . . . . . Csa03g00278 Chy06g02044 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002899 1 4 2 2 1 2 3 2 2 2 2 2 2 2 2 1 2 2 2 2 2 1 1 1 1 1 1 2 1 3 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00583 Bpe_Chr05 FPKM 6.776215 6.457277 16.567171 14.892335 7.97471 10.354827 8.449553 0.195424 0.107724 0.091855