Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00590 ATGTCGGCTTGCAAAGACGAAGATCCTCGCGTCTACGGCATCAAAAGTAATATTCGCGTTGTACCAAATTTCCCCAAACCAGGAATCATGTTTCAAGACATAACCACTCTGCTACTTGAACCGAAAGCATTCAAAGACACGATCGAAATGTTTGTTGAGCGATACAAAGAAAAAGACATTTCAGTTGTTGCAGGAATAGAAGCTCGAGGTTTTATATTTGGTCCTCCAATTGCACTGGCTATAGGTGCAAAGTTTGTTCCTTTGAGGAAACCCAAGAAGTTACCGGGGGAAGTTATTTTTGAAGAGTATGAGCTCGAATATGGAAGGGATTGTCTCGAGATGCATGTTGGAGCTGTCAAGGTCGGTGATCGGGCTTTGCTGGTCGATGATTTAATCGCTACCGGTGGAACTCTATGTGCTGCCATCAATTTACTTGAACGAGCCGGAGCAGAAGTGGTCGAATGCGCCTGCATCATCGAATTGCTGGAATTAAAGGGTCGGGAAAGGCTGAACGGAAAGCCGCTGTATGTGCTGGTGGAGAACCGCTGA 549 45.72 MSACKDEDPRVYGIKSNIRVVPNFPKPGIMFQDITTLLLEPKAFKDTIEMFVERYKEKDISVVAGIEARGFIFGPPIALAIGAKFVPLRKPKKLPGEVIFEEYELEYGRDCLEMHVGAVKVGDRALLVDDLIATGGTLCAAINLLERAGAEVVECACIIELLELKGRERLNGKPLYVLVENR 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19955139 19958769 - Bpe018006.2 Bpe05g00590 104367

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00590 182 CDD PRTases_typeI 48 180 IPR000836 -
Bpe05g00590 182 Hamap Adenine phosphoribosyltransferase [apt]. 14 181 IPR005764 GO:0003999|GO:0005737|GO:0006168
Bpe05g00590 182 Gene3D - 2 181 IPR029057 -
Bpe05g00590 182 SUPERFAMILY PRTase-like 11 175 IPR029057 -
Bpe05g00590 182 TIGRFAM apt: adenine phosphoribosyltransferase 14 180 IPR005764 GO:0003999|GO:0005737|GO:0006168
Bpe05g00590 182 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 2 181 - -
Bpe05g00590 182 Pfam Phosphoribosyl transferase domain 41 160 IPR000836 -
Bpe05g00590 182 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 3-RELATED 2 181 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00590 K00759 APRT, apt; adenine phosphoribosyltransferase [EC:2.4.2.7] - vvi:100264315 323.939
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01252 Bpe-Chr2:16030396 Bpe05g00590 Bpe-Chr5:19955139 4.93E-65 dispersed
Bpe05g00045 Bpe-Chr5:779054 Bpe05g00590 Bpe-Chr5:19955139 8.47E-96 dispersed
Bpe05g00590 Bpe-Chr5:19955139 Bpe14g00584 Bpe-Chr14:4913633 3.61E-92 dispersed
Bpe05g00590 Bpe-Chr5:19955139 Bpe07g00164 Bpe-Chr7:1124978 2.27E-118 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe14g00584 CCT,ECH 33 188 PRT Gene Family AT1G80050 75.0 2.0e-64 241.9
Bpe07g00164 . 30 180 PRT Gene Family AT1G80050 75.5 8.6e-63 236.5
Bpe05g00590 . 30 180 PRT Gene Family AT1G80050 76.2 2.5e-62 235.0
Bpe05g00045 . 27 176 PRT Gene Family AT1G80050 69.3 2.0e-56 215.3
Bpe02g01252 CCT,ECH 33 158 PRT Gene Family AT1G80050 58.3 1.4e-44 176.0
Bpe14g00584 CCT,ECH 1 148 PRT Gene Family AT5G11160 85.1 4.6e-67 250.8
Bpe07g00164 . 8 145 PRT Gene Family AT5G11160 73.9 5.8e-54 207.2
Bpe05g00590 . 8 145 PRT Gene Family AT5G11160 72.5 3.8e-53 204.5
Bpe05g00045 . 5 142 PRT Gene Family AT5G11160 70.3 6.4e-53 203.8
Bpe02g01252 CCT,ECH 1 118 PRT Gene Family AT5G11160 62.8 8.7e-42 166.8
Bpe05g00045 . 4 179 PRT Gene Family AT1G27450 81.3 3.7e-78 287.7
Bpe07g00164 . 1 180 PRT Gene Family AT1G27450 75.0 3.8e-75 277.7
Bpe05g00590 . 7 181 PRT Gene Family AT1G27450 73.1 2.6e-71 265.0
Bpe14g00584 CCT,ECH 11 183 PRT Gene Family AT1G27450 71.7 4.1e-69 257.7
Bpe02g01252 CCT,ECH 11 153 PRT Gene Family AT1G27450 54.3 1.1e-45 179.9
Bpe05g00303 . 80 558 PRT Gene Family AT2G16570 85.0 2.2e-238 821.6
Bpe05g00303 . 80 558 PRT Gene Family AT4G34740 85.4 5.7e-239 823.5
Bpe05g00303 . 80 531 PRT Gene Family AT4G38880 75.1 2.4e-194 675.2
Bpe05g00045 . 4 179 PRT Gene Family AT1G27450 81.3 3.7e-78 287.7
Bpe07g00164 . 1 180 PRT Gene Family AT1G27450 75.0 3.8e-75 277.7
Bpe05g00590 . 7 181 PRT Gene Family AT1G27450 73.1 2.6e-71 265.0
Bpe14g00584 CCT,ECH 11 183 PRT Gene Family AT1G27450 71.7 4.1e-69 257.7
Bpe02g01252 CCT,ECH 11 153 PRT Gene Family AT1G27450 54.3 1.1e-45 179.9
Bpe14g00584 CCT,ECH 33 188 PRT Gene Family AT1G80050 75.0 2.0e-64 241.9
Bpe07g00164 . 30 180 PRT Gene Family AT1G80050 75.5 8.6e-63 236.5
Bpe05g00590 . 30 180 PRT Gene Family AT1G80050 76.2 2.5e-62 235.0
Bpe05g00045 . 27 176 PRT Gene Family AT1G80050 69.3 2.0e-56 215.3
Bpe02g01252 CCT,ECH 33 158 PRT Gene Family AT1G80050 58.3 1.4e-44 176.0
Bpe07g00164 . 1 97 PRT Gene Family AT4G22570 83.7 1.3e-43 172.2
Bpe05g00590 . 5 97 PRT Gene Family AT4G22570 81.7 5.5e-42 166.8
Bpe05g00045 . 4 94 PRT Gene Family AT4G22570 79.1 5.3e-37 150.2
Bpe07g00164 . 1 96 PRT Gene Family AT4G12440 83.3 3.3e-41 164.1
Bpe05g00590 . 1 96 PRT Gene Family AT4G12440 80.2 3.0e-39 157.5
Bpe14g00584 CCT,ECH 1 148 PRT Gene Family AT5G11160 85.1 4.6e-67 250.8
Bpe07g00164 . 8 145 PRT Gene Family AT5G11160 73.9 5.8e-54 207.2
Bpe05g00590 . 8 145 PRT Gene Family AT5G11160 72.5 3.8e-53 204.5
Bpe05g00045 . 5 142 PRT Gene Family AT5G11160 70.3 6.4e-53 203.8
Bpe02g01252 CCT,ECH 1 118 PRT Gene Family AT5G11160 62.8 8.7e-42 166.8
Bpe02g01097 . 1 186 PRT Gene Family AT1G71750 60.4 1.5e-61 232.6
Bpe11g00604 . 28 482 PRT Gene Family AT1G55810 83.1 3.7e-220 760.8
Bpe08g01082 . 739 1125 PRT Gene Family AT1G55810 83.7 8.8e-190 659.8
Bpe14g00215 . 19 525 PRT Gene Family AT1G55810 66.3 1.7e-188 655.6
Bpe11g00604 . 79 487 PRT Gene Family AT3G27440 74.1 5.5e-178 620.5
Bpe14g00215 . 81 525 PRT Gene Family AT3G27440 68.1 1.1e-170 596.3
Bpe08g01082 . 739 1125 PRT Gene Family AT3G27440 72.6 1.2e-164 576.2
Bpe14g00215 . 1 525 PRT Gene Family AT3G27190 78.5 1.4e-233 805.4
Bpe11g00604 . 14 481 PRT Gene Family AT3G27190 73.1 9.7e-203 703.0
Bpe08g01082 . 739 1125 PRT Gene Family AT3G27190 77.3 5.4e-177 617.5
Bpe03g01028 . 1 239 PRT Gene Family AT3G53900 73.3 4.2e-100 361.3
Bpe11g00604 . 13 482 PRT Gene Family AT4G26510 82.7 2.9e-228 787.7
Bpe14g00215 . 11 525 PRT Gene Family AT4G26510 69.5 1.4e-201 699.1
Bpe08g01082 . 739 1125 PRT Gene Family AT4G26510 84.2 1.3e-191 666.0
Bpe14g00215 . 1 525 PRT Gene Family AT5G40870 79.8 1.4e-238 822.0
Bpe11g00604 . 14 484 PRT Gene Family AT5G40870 73.1 1.2e-203 706.1
Bpe08g01082 . 739 1125 PRT Gene Family AT5G40870 76.7 4.6e-176 614.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000311 4 6 3 5 5 4 7 4 4 4 4 4 7 4 4 7 4 6 1 4 4 4 4 5 4 4 4 10 6 3 139
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00590 Bpe_Chr05 FPKM 4.336283 6.871974 4.041576 4.5634 5.885569 4.175224 7.853622 3.25763 3.099098 3.405114