Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00592 ATGTCATCTTCTTCATCGACTACTCCCTTTTCTCCAGCTCTGGACCACCTCCCCCTCTCCGAGCAGCTATGTTACGTCCACTGCAAAATTTGTGACACCATTCTTGCGGTGAGTGTTCCTTGCAGTAGTTTCTTCAAGACCGTGACAGTCCGATGCGGCCACTGCACTAACCTTCTGCCGTTGAACATGCGAGCCGAGCTCTTTCCTTCGACCAATCCTCAATTTCATCAGCTGAATCGCCCCTTCTTCTCTCCTTCTTTCAATCTTCTGGAAGAGATTCAGAATCCATCTCCCAACTTTCTGATCAGCCAAACAAGCGCAAATCATTACACTACTCCACCTCGACTAACTGACGAGCTTCCGAGAGCTCCAGTAATCAACAGACCTCCAGAGAAGAGACAAAGAGTTCCCTCTGCATATAACAGGTTCATCAAGGACGAGATTCAACGCATCAAGTCTGTGAATCCCGATATATCACACAGAGAAGCTTTCAGTGCAGCAGCTAAGAATTGGGCCCACTTTCCCCATATTCATTTTGGTTTCATACCTGATCAAACTCTGAAGACGAAGACAATCACGCGTCAGGAAGGAGAAGACCAAATTCTGATGAAAGATGGGTTTTTAGCTTCAGCAAACGTGGGTTTCTCCCCTTTCTAA 657 46.73 MSSSSSTTPFSPALDHLPLSEQLCYVHCKICDTILAVSVPCSSFFKTVTVRCGHCTNLLPLNMRAELFPSTNPQFHQLNRPFFSPSFNLLEEIQNPSPNFLISQTSANHYTTPPRLTDELPRAPVINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGFIPDQTLKTKTITRQEGEDQILMKDGFLASANVGFSPF 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19976884 19978803 - Bpe018009.1 Bpe05g00592 104369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00592 218 Pfam YABBY protein 20 180 IPR006780 GO:0007275
Bpe05g00592 218 SUPERFAMILY HMG-box 126 174 IPR036910 -
Bpe05g00592 218 Gene3D High mobility group box domain 125 176 IPR036910 -
Bpe05g00592 218 PANTHER AXIAL REGULATOR YABBY 3 1 215 - -
Bpe05g00592 218 PANTHER PROTEIN YABBY 6-RELATED 1 215 IPR006780 GO:0007275
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe05g00592 Bpe11g00259 CCT
Bpe05g00592 Bpe07g00159 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g02129 Bpe-Chr2:22651365 Bpe05g00592 Bpe-Chr5:19976884 3.44E-53 dispersed
Bpe05g00592 Bpe-Chr5:19976884 Bpe05g01079 Bpe-Chr5:23283427 6.13E-94 dispersed
Bpe11g01781 Bpe-Chr11:14157309 Bpe05g00592 Bpe-Chr5:19976884 8.82E-36 dispersed
Bpe11g00259 Bpe-Chr11:1881777 Bpe05g00592 Bpe-Chr5:19976884 4.38E-108 wgd
Bpe04g01012 Bpe-Chr4:7094515 Bpe05g00592 Bpe-Chr5:19976884 1.20E-67 wgd
Bpe05g00592 Bpe-Chr5:19976884 Bpe07g00159 Bpe-Chr7:1098565 9.14E-131 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21454 PF04690 YABBY 2.50E-68 CL0114 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00592 K25796 - qsu:112020341 322.013