Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bpe05g00598 | ATGGTGGCATATGCCAACAGACACGCATTTAGCTATATTCCCCAAGTTATCAGGGAACAGAGGACTCAAAGAAAGATGTTGAATCAGTTGGAGAATAAGGGTTTGATCAAACCAGCCGAACCATATCTTTGTCGGGTCTGCGGGAGAAAATTTCACACAAACGAGAAGCTGGTCAATCATTTTAAGCAAATTCACGAACGGGAGCAGCATAAGAGGTTGAACAAAATCGAGTCCGCAAAGGGGAGCAAGAGGGTGAAGTTGGTATCAATGTACACAATGAAAATGCACAAGTATAAGAACGCAGCCAGGGATGTTTTGACTCCAAAGGTGGGATATGGTTTGGCAGATGAGTTAAAAAGAGCAGGTTTTAGAGTAAATATGGTGTCTAACAAGCCAGAAGCAGCCGACATTGCATTGAAAGATCATATGGTTGAAATGATGGACAAGAGGAGGGTTGGATGTTTGGTGCTTGTCTCTGATGATTTGGACTTTTTGGGTGTTTTGAAGGAGGCCAAATTGAGATGTCTGAAGACGGTTGTAGTGGGCGATACTGATGATGGGGTGCTGAAACGGAATGCCGATTCTGCATTTTCTTGGAAGGAAGTTTTGATGGGGAAAGCCAAGAAGGAGGCGGCTTCAGTCATGGGGAAATGGAAGGATCGTGATGTTTTGAAGCAATTGGAGTGGACGTATAATCCTAAATTGGAGAAACAAAATTATAGTCCGATCGATGTCGAAGAATTTCCGAGCACAGAGATAGAAGATTTTGATTGGGAAGAGCCATGA | 786 | 43.26 | MVAYANRHAFSYIPQVIREQRTQRKMLNQLENKGLIKPAEPYLCRVCGRKFHTNEKLVNHFKQIHEREQHKRLNKIESAKGSKRVKLVSMYTMKMHKYKNAARDVLTPKVGYGLADELKRAGFRVNMVSNKPEAADIALKDHMVEMMDKRRVGCLVLVSDDLDFLGVLKEAKLRCLKTVVVGDTDDGVLKRNADSAFSWKEVLMGKAKKEAASVMGKWKDRDVLKQLEWTYNPKLEKQNYSPIDVEEFPSTEIEDFDWEEP | 261 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 20009141 | 20009926 | - | Bpe018015.1 | Bpe05g00598 | 104375 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bpe05g00598 | 261 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 42 | 70 | IPR013087 | - | |
Bpe05g00598 | 261 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 44 | 65 | IPR013087 | - | |
Bpe05g00598 | 261 | PANTHER | - | 1 | 242 | - | - | |
Bpe05g00598 | 261 | Pfam | NYN domain | 114 | 194 | IPR021139 | GO:0004540 | |
Bpe05g00598 | 261 | Gene3D | - | 4 | 204 | - | - | |
Bpe05g00598 | 261 | PANTHER | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN | 1 | 242 | - | - | |
Bpe05g00598 | 261 | SUPERFAMILY | beta-beta-alpha zinc fingers | 39 | 68 | IPR036236 | - | |
Bpe05g00598 | 261 | CDD | PIN_LabA-like | 53 | 183 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bpe05g00032 | Bpe-Chr5:615113 | Bpe05g00598 | Bpe-Chr5:20009141 | 2.56E-54 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
21455 | PF01936 | NYN | 2.00E-05 | CL0280 | Bpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bpe05g00598 | - | - | tcc:18606352 | 386.341 |