Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00598 ATGGTGGCATATGCCAACAGACACGCATTTAGCTATATTCCCCAAGTTATCAGGGAACAGAGGACTCAAAGAAAGATGTTGAATCAGTTGGAGAATAAGGGTTTGATCAAACCAGCCGAACCATATCTTTGTCGGGTCTGCGGGAGAAAATTTCACACAAACGAGAAGCTGGTCAATCATTTTAAGCAAATTCACGAACGGGAGCAGCATAAGAGGTTGAACAAAATCGAGTCCGCAAAGGGGAGCAAGAGGGTGAAGTTGGTATCAATGTACACAATGAAAATGCACAAGTATAAGAACGCAGCCAGGGATGTTTTGACTCCAAAGGTGGGATATGGTTTGGCAGATGAGTTAAAAAGAGCAGGTTTTAGAGTAAATATGGTGTCTAACAAGCCAGAAGCAGCCGACATTGCATTGAAAGATCATATGGTTGAAATGATGGACAAGAGGAGGGTTGGATGTTTGGTGCTTGTCTCTGATGATTTGGACTTTTTGGGTGTTTTGAAGGAGGCCAAATTGAGATGTCTGAAGACGGTTGTAGTGGGCGATACTGATGATGGGGTGCTGAAACGGAATGCCGATTCTGCATTTTCTTGGAAGGAAGTTTTGATGGGGAAAGCCAAGAAGGAGGCGGCTTCAGTCATGGGGAAATGGAAGGATCGTGATGTTTTGAAGCAATTGGAGTGGACGTATAATCCTAAATTGGAGAAACAAAATTATAGTCCGATCGATGTCGAAGAATTTCCGAGCACAGAGATAGAAGATTTTGATTGGGAAGAGCCATGA 786 43.26 MVAYANRHAFSYIPQVIREQRTQRKMLNQLENKGLIKPAEPYLCRVCGRKFHTNEKLVNHFKQIHEREQHKRLNKIESAKGSKRVKLVSMYTMKMHKYKNAARDVLTPKVGYGLADELKRAGFRVNMVSNKPEAADIALKDHMVEMMDKRRVGCLVLVSDDLDFLGVLKEAKLRCLKTVVVGDTDDGVLKRNADSAFSWKEVLMGKAKKEAASVMGKWKDRDVLKQLEWTYNPKLEKQNYSPIDVEEFPSTEIEDFDWEEP 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20009141 20009926 - Bpe018015.1 Bpe05g00598 104375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00598 261 ProSiteProfiles Zinc finger C2H2 type domain profile. 42 70 IPR013087 -
Bpe05g00598 261 ProSitePatterns Zinc finger C2H2 type domain signature. 44 65 IPR013087 -
Bpe05g00598 261 PANTHER - 1 242 - -
Bpe05g00598 261 Pfam NYN domain 114 194 IPR021139 GO:0004540
Bpe05g00598 261 Gene3D - 4 204 - -
Bpe05g00598 261 PANTHER ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN 1 242 - -
Bpe05g00598 261 SUPERFAMILY beta-beta-alpha zinc fingers 39 68 IPR036236 -
Bpe05g00598 261 CDD PIN_LabA-like 53 183 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00032 Bpe-Chr5:615113 Bpe05g00598 Bpe-Chr5:20009141 2.56E-54 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21455 PF01936 NYN 2.00E-05 CL0280 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00598 - - tcc:18606352 386.341