Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00608 ATGGACGCCCATTCTCTCCCACCTCCTTTTCCTAACATAGATTTCCATCTTCTCCAACAGCAACGCGAGTTTCTTCACCACCAGCAACTGCAAAATTTAGATCACGACGAGCAAAGCGGAAGTAACGGACTGAACCGGATCAAGAAACGAGATCGAGACGAAAACAGTGATGACGGTGGAGATGGCAGCAAAGACCTCGCCGGAGAAGGATCAGAAATCTCTAGACGACCTCGAGGAAGACCTTCCGGATCTAAAAACAAACCCAAACCTCCGATCATCATTTCTAGGGACAGCGCTAACGCTCTACACACCCATGTTATAGAAGTCACAGACGGATGTGATATAATCGAGAGAGTTTCCACCTTCGCTCGCCGGAGACATTCGGGCGTCTGCATAATGAGCGGCGCTGGAACGGTGACAAACGTGACTCTCCGACAGCCGGCTTCGACAGGTGCAGTCGTCTCTTTACCCGGTCGGTTCGAGATCTTATCTCTATCCGGCTCGTTTCTACCACCTCCTGCGCCTCCGGCAGCCACAGGTTTGACCATATACTTTGCCGGAGGGCAAGGTCAGGTGGTCGGAGGAAGTGTTGAAGGGGCATTGCTTGCTTCAGGTCCGGTGGTGATTATGGCTGCTTCTTTTAGCAACGCTGAATATGAGAGGCTTCCTCTTGAAGACGATGAAGTCCCTCCATTGCCAATCCAAGGAAGCTCAACTGGATCTCCAGGTGCAGTCAATCAAATCCAACCATTAACGGCGGATGGGAATCAGCCGCATTTATTCCATGGGTTGCCTCCGAATCTTCTAAACTCAATTCAATTACCAGCTGAAGCTTACTACGCAACAGGTCGACCTCCTTTCTAA 864 50.58 MDAHSLPPPFPNIDFHLLQQQREFLHHQQLQNLDHDEQSGSNGLNRIKKRDRDENSDDGGDGSKDLAGEGSEISRRPRGRPSGSKNKPKPPIIISRDSANALHTHVIEVTDGCDIIERVSTFARRRHSGVCIMSGAGTVTNVTLRQPASTGAVVSLPGRFEILSLSGSFLPPPAPPAATGLTIYFAGGQGQVVGGSVEGALLASGPVVIMAASFSNAEYERLPLEDDEVPPLPIQGSSTGSPGAVNQIQPLTADGNQPHLFHGLPPNLLNSIQLPAEAYYATGRPPF 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20055925 20056788 + Bpe018025.1 Bpe05g00608 104385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00608 287 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 24-RELATED 3 287 - -
Bpe05g00608 287 CDD DUF296 104 214 IPR005175 -
Bpe05g00608 287 Gene3D - 103 237 - -
Bpe05g00608 287 MobiDBLite consensus disorder prediction 26 97 - -
Bpe05g00608 287 ProSiteProfiles PPC domain profile profile. 99 235 IPR005175 -
Bpe05g00608 287 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 3 287 IPR014476 GO:0003680
Bpe05g00608 287 MobiDBLite consensus disorder prediction 41 79 - -
Bpe05g00608 287 PIRSF ESCAROLA 16 285 IPR014476 GO:0003680
Bpe05g00608 287 Pfam Plants and Prokaryotes Conserved (PCC) domain 104 216 IPR005175 -
Bpe05g00608 287 SUPERFAMILY AF0104/ALDC/Ptd012-like 99 234 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe05g00608 Bpe11g00699 CCT
Bpe05g00608 Bpe07g00142 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00608 Bpe-Chr5:20055925 Bpe14g00904 Bpe-Chr14:6741793 9.43E-98 dispersed
Bpe11g00699 Bpe-Chr11:5379086 Bpe05g00608 Bpe-Chr5:20055925 4.28E-116 wgd
Bpe13g00896 Bpe-Chr13:15019899 Bpe05g00608 Bpe-Chr5:20055925 2.11E-63 wgd
Bpe05g00608 Bpe-Chr5:20055925 Bpe07g00142 Bpe-Chr7:1007613 1.74E-138 wgd
Bpe05g00608 Bpe-Chr5:20055925 Bpe08g01463 Bpe-Chr8:15334411 1.97E-103 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00608 - - vvi:100265031 353.984