Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00611 ATGACTTATCGTGAGGGAGAGGGTGATGGGGGAGGAGAGGTGGTGCCGGAGCTGAGCTTGAGAATGGAAGGGAACGGTGACAATGGGGATTATTTCAAATTGGAGGGCTGCTCTAATGATTCGCATGCAGAAGAGGAGTATATTGGGGTGCCTGAGCCTTCTTCTCCGGCGATGATTACCGGAGCTTTGTGGCGCTGGGTTAGGTTTGTTGTGTTGCTCGTATTTTTGGGGTTATTAGCTGTGGTTTGTATTAAATGGGTCGGGCCGTTTCTCATGGACAAGGAAATTATACCTCTTATAAATTGGGAGACAACAACGTTTAGTATTCCAGTTCTGGCAATTCTGGTTGTTTCATCCGTCGCAATATTTCCAACCATTTTCTTACCATCTACGCCTTCAATGTGGGTGGCAGGTATAACTTTCGGCTACGGGTATGGATTTCTTTTAATTATATCTGGGGCAGTAATTGGTGTTTCTCTTCCGTTTTTGATCGGATCAGTCTTCTCTCATAAAATTCAAGGGTGGTTAGAAAAATATCCAAAGAGAGCTTCTGTGTTAAGATCAGCTGGTGAGGGTAATTGGTTCCATCAGTTCCGAGCGGTAACACTGATCCGGATTTCCCCATTCCCATATATCATATATAACTATTGTGCAGTGGCTACAAATGTTAGATATACTCCTTACCTTTTGGGGTCATTGGTCGGGATGATTCCTGAAATATTTGTTTCAATCTACACTGGCATTGTCATAAAAACCTTGGCCGACGCCTCTCATCAACGACATGGTCTCTCTGCCCCACAGATTGTCTTCAACGTGATTGGCTTTTGTGCAACTGTAGCCACAACCGTTGTCTTCACCATGTCAGCGAAAAGGAGGCTAAAGCAAATGCAAAACGAAGACAACCAACTTCTCCGGTGA 918 44.55 MTYREGEGDGGGEVVPELSLRMEGNGDNGDYFKLEGCSNDSHAEEEYIGVPEPSSPAMITGALWRWVRFVVLLVFLGLLAVVCIKWVGPFLMDKEIIPLINWETTTFSIPVLAILVVSSVAIFPTIFLPSTPSMWVAGITFGYGYGFLLIISGAVIGVSLPFLIGSVFSHKIQGWLEKYPKRASVLRSAGEGNWFHQFRAVTLIRISPFPYIIYNYCAVATNVRYTPYLLGSLVGMIPEIFVSIYTGIVIKTLADASHQRHGLSAPQIVFNVIGFCATVATTVVFTMSAKRRLKQMQNEDNQLLR 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20065461 20067655 + Bpe018027.1 Bpe05g00611 104388

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00611 305 PANTHER EXPRESSED PROTEIN 1 303 - -
Bpe05g00611 305 Pfam SNARE associated Golgi protein 128 247 IPR032816 -
Bpe05g00611 305 PANTHER SNARE ASSOCIATED GOLGI PROTEIN FAMILY 1 303 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00611 - - - jre:109010875 413.305
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00611 Bpe-Chr5:20065461 Bpe07g00047 Bpe-Chr7:402694 1.02E-83 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g454 Blo02g01072 . Bda06g00059 . Bpe05g00611 . . . . Cmo16g01076 . . . . . Cpe14g00850 . . . . . . . . Cla10g00312 Cam10g0327 Cec10g0339 Cco10g0332 Clacu10g0323 Cmu10g1163 Cre10g0573 Cone8ag0349 Cone12ag0343 Cone6ag0723 Cone9ag0729 Lsi07g01361 . . Cme06g02646 . . . . . . . Bma12g00117 . . . . Cma16g01030 . Car16g00981 . . . . . . . . . . . . . . . . . Csa03g00335 Chy06g01990 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006552 1 0 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00611 Bpe_Chr05 FPKM 6.794466 6.62831 9.496003 10.287222 27.63575 20.253094 24.653131 9.307551 9.986877 8.925903